miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7124 3' -59.8 NC_001895.1 + 19028 0.66 0.340991
Target:  5'- gGUGGCuucccggauucGGUUAUCugGgagcuuuacGCCGCAACCGGu -3'
miRNA:   3'- -UACCG-----------UCGGUGGugC---------CGGUGUUGGCC- -5'
7124 3' -59.8 NC_001895.1 + 17718 0.66 0.331914
Target:  5'- -cGGCauGGUCugCACGGCCAgCGAUgcagaugCGGa -3'
miRNA:   3'- uaCCG--UCGGugGUGCCGGU-GUUG-------GCC- -5'
7124 3' -59.8 NC_001895.1 + 21576 0.67 0.284104
Target:  5'- uUGGCAgugcuguuaugaccGCCAUCGgGGCUAUuagcuGGCCGGu -3'
miRNA:   3'- uACCGU--------------CGGUGGUgCCGGUG-----UUGGCC- -5'
7124 3' -59.8 NC_001895.1 + 10457 0.67 0.271983
Target:  5'- -cGGUgcacauGCCGCCggucugcacGCGGCaGCGACCGGc -3'
miRNA:   3'- uaCCGu-----CGGUGG---------UGCCGgUGUUGGCC- -5'
7124 3' -59.8 NC_001895.1 + 7640 0.67 0.271983
Target:  5'- -aGGCAGCgACaaaauugACGGCCACGcucuGCgGGu -3'
miRNA:   3'- uaCCGUCGgUGg------UGCCGGUGU----UGgCC- -5'
7124 3' -59.8 NC_001895.1 + 12268 0.68 0.245105
Target:  5'- -cGGCGGCgACCucaaGCGGUgAUgAGCCGGu -3'
miRNA:   3'- uaCCGUCGgUGG----UGCCGgUG-UUGGCC- -5'
7124 3' -59.8 NC_001895.1 + 5736 0.68 0.245105
Target:  5'- -cGGCGGCauCACCACcGUCACGcagaaacagACCGGu -3'
miRNA:   3'- uaCCGUCG--GUGGUGcCGGUGU---------UGGCC- -5'
7124 3' -59.8 NC_001895.1 + 21221 0.69 0.22047
Target:  5'- -cGGCAGUCAUcagCACGGCaGCGGCUGa -3'
miRNA:   3'- uaCCGUCGGUG---GUGCCGgUGUUGGCc -5'
7124 3' -59.8 NC_001895.1 + 5859 0.69 0.203406
Target:  5'- -gGGUGGCCGCuUugGGCUGCGgcuCCGGc -3'
miRNA:   3'- uaCCGUCGGUG-GugCCGGUGUu--GGCC- -5'
7124 3' -59.8 NC_001895.1 + 5605 0.69 0.203406
Target:  5'- -cGGCAGCgugagCGCgCAUGGCCGCAAgCGc -3'
miRNA:   3'- uaCCGUCG-----GUG-GUGCCGGUGUUgGCc -5'
7124 3' -59.8 NC_001895.1 + 20564 0.69 0.203406
Target:  5'- -cGGCGacaauaccGCCGCCuCGGCagaugauGCAGCCGGu -3'
miRNA:   3'- uaCCGU--------CGGUGGuGCCGg------UGUUGGCC- -5'
7124 3' -59.8 NC_001895.1 + 18582 0.69 0.192676
Target:  5'- uGUGcGCcucAGCCAUCGuguCGGCCACGACCu- -3'
miRNA:   3'- -UAC-CG---UCGGUGGU---GCCGGUGUUGGcc -5'
7124 3' -59.8 NC_001895.1 + 20442 0.7 0.182445
Target:  5'- -cGGCAGCgC-CCACugaGGCCAUAuuuCCGGc -3'
miRNA:   3'- uaCCGUCG-GuGGUG---CCGGUGUu--GGCC- -5'
7124 3' -59.8 NC_001895.1 + 19788 0.7 0.177512
Target:  5'- gAUGGCGGCCAgugaaauaUCACuGCCACAuCCGc -3'
miRNA:   3'- -UACCGUCGGU--------GGUGcCGGUGUuGGCc -5'
7124 3' -59.8 NC_001895.1 + 13621 0.71 0.150339
Target:  5'- -gGGCGGCaAUCGCGGCCAUAACg-- -3'
miRNA:   3'- uaCCGUCGgUGGUGCCGGUGUUGgcc -5'
7124 3' -59.8 NC_001895.1 + 11948 0.74 0.085011
Target:  5'- gAUGGCGGCagaCugCACGGUCACGcggucggccACCGGc -3'
miRNA:   3'- -UACCGUCG---GugGUGCCGGUGU---------UGGCC- -5'
7124 3' -59.8 NC_001895.1 + 21675 1.07 0.000233
Target:  5'- aAUGGCAGCCACCACGGCCACAACCGGc -3'
miRNA:   3'- -UACCGUCGGUGGUGCCGGUGUUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.