Results 1 - 6 of 6 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7127 | 3' | -51.5 | NC_001895.1 | + | 6830 | 0.66 | 0.75777 |
Target: 5'- -cUCGGUGGuuuUGUCUCGaugguUGCCGGUGUu -3' miRNA: 3'- uuAGUCAUU---GCAGAGU-----ACGGUCGCGu -5' |
|||||||
7127 | 3' | -51.5 | NC_001895.1 | + | 17715 | 0.66 | 0.75777 |
Target: 5'- uGUCGGcAugGUCUgCAcgGCCAGCGa- -3' miRNA: 3'- uUAGUCaUugCAGA-GUa-CGGUCGCgu -5' |
|||||||
7127 | 3' | -51.5 | NC_001895.1 | + | 10413 | 0.66 | 0.700347 |
Target: 5'- aGGUCGGUuuCGaCgauaAUGCCAGUGCGa -3' miRNA: 3'- -UUAGUCAuuGCaGag--UACGGUCGCGU- -5' |
|||||||
7127 | 3' | -51.5 | NC_001895.1 | + | 5408 | 0.68 | 0.6278 |
Target: 5'- cGGUCAugcuGUGGCGUCUgGauaccggcgauauUGCCGGUGCGc -3' miRNA: 3'- -UUAGU----CAUUGCAGAgU-------------ACGGUCGCGU- -5' |
|||||||
7127 | 3' | -51.5 | NC_001895.1 | + | 4675 | 0.69 | 0.569483 |
Target: 5'- cGUCAGUGACcuugCUCAUcacgccGCCGGUGCu -3' miRNA: 3'- uUAGUCAUUGca--GAGUA------CGGUCGCGu -5' |
|||||||
7127 | 3' | -51.5 | NC_001895.1 | + | 28749 | 1.06 | 0.001486 |
Target: 5'- cAAUCAGUAACGUCUCAUGCCAGCGCAu -3' miRNA: 3'- -UUAGUCAUUGCAGAGUACGGUCGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home