Results 1 - 5 of 5 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7128 | 3' | -50.4 | NC_001895.1 | + | 19662 | 0.66 | 0.826507 |
Target: 5'- gGUCaGGCAGUUccaGCGCGGcGACuuccUGCu -3' miRNA: 3'- -CAGaCUGUUAG---CGCGCC-CUGuaa-ACG- -5' |
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7128 | 3' | -50.4 | NC_001895.1 | + | 13713 | 0.69 | 0.672768 |
Target: 5'- -cCUGACGG-CGCugGCGGGGC--UUGCu -3' miRNA: 3'- caGACUGUUaGCG--CGCCCUGuaAACG- -5' |
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7128 | 3' | -50.4 | NC_001895.1 | + | 10438 | 0.75 | 0.329373 |
Target: 5'- -gCUGACccAUCGCGCaGGACGUUcGCg -3' miRNA: 3'- caGACUGu-UAGCGCGcCCUGUAAaCG- -5' |
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7128 | 3' | -50.4 | NC_001895.1 | + | 13794 | 0.77 | 0.244662 |
Target: 5'- -cCUGACAaaaGUCGgGCGGGAUAUUcugGCu -3' miRNA: 3'- caGACUGU---UAGCgCGCCCUGUAAa--CG- -5' |
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7128 | 3' | -50.4 | NC_001895.1 | + | 29704 | 1.12 | 0.001081 |
Target: 5'- aGUCUGACAAUCGCGCGGGACAUUUGCc -3' miRNA: 3'- -CAGACUGUUAGCGCGCCCUGUAAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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