Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7129 | 5' | -59.5 | NC_001895.1 | + | 10503 | 0.66 | 0.334707 |
Target: 5'- uUCUGGCCGUgGgUGGUGAacucgaCaCGGCGu -3' miRNA: 3'- -AGACCGGCAgUgGCUACUg-----G-GCCGUu -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 2483 | 0.67 | 0.310647 |
Target: 5'- aUCUGGCgGgauuucaggauaUCGCgGAUGcggugcucaaGCCCGGCAc -3' miRNA: 3'- -AGACCGgC------------AGUGgCUAC----------UGGGCCGUu -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 1998 | 0.67 | 0.310647 |
Target: 5'- aCUGGCCGUcCGCacaGA-GAagcccaCCGGCAAg -3' miRNA: 3'- aGACCGGCA-GUGg--CUaCUg-----GGCCGUU- -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 7389 | 0.67 | 0.310647 |
Target: 5'- aUCUGGgCGUCccuGCCGG-GugCCGGUu- -3' miRNA: 3'- -AGACCgGCAG---UGGCUaCugGGCCGuu -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 2684 | 0.67 | 0.302924 |
Target: 5'- gUCUGGCUGUaGCgGuUGACCCGuGCc- -3' miRNA: 3'- -AGACCGGCAgUGgCuACUGGGC-CGuu -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 22442 | 0.67 | 0.280647 |
Target: 5'- gCUGGCCGgugugcuuuaUC-CCGAacUGACCggCGGCAAg -3' miRNA: 3'- aGACCGGC----------AGuGGCU--ACUGG--GCCGUU- -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 2387 | 0.67 | 0.273516 |
Target: 5'- gUCUGGUugaCGUUgaccugACCGGUGACCCgauuguccugGGCAAu -3' miRNA: 3'- -AGACCG---GCAG------UGGCUACUGGG----------CCGUU- -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 7037 | 0.69 | 0.198971 |
Target: 5'- gCUGGCCGUguCCGAaGGgaCGGCGAa -3' miRNA: 3'- aGACCGGCAguGGCUaCUggGCCGUU- -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 22526 | 0.76 | 0.069499 |
Target: 5'- -gUGGCCGUUGCUgGAUGGCaCCGGCAu -3' miRNA: 3'- agACCGGCAGUGG-CUACUG-GGCCGUu -5' |
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7129 | 5' | -59.5 | NC_001895.1 | + | 3534 | 1.06 | 0.000285 |
Target: 5'- gUCUGGCCGUCACCGAUGACCCGGCAAg -3' miRNA: 3'- -AGACCGGCAGUGGCUACUGGGCCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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