Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7131 | 3' | -58.7 | NC_001895.1 | + | 5187 | 0.66 | 0.387468 |
Target: 5'- cAUCGGUuacgcUC-CCGGCUCUgcgGUCGCCu- -3' miRNA: 3'- -UAGCCAc----AGuGGCCGAGG---UAGCGGuc -5' |
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7131 | 3' | -58.7 | NC_001895.1 | + | 18334 | 0.67 | 0.326923 |
Target: 5'- -aCGGUGUUACCGGCaUCAgCGCa-- -3' miRNA: 3'- uaGCCACAGUGGCCGaGGUaGCGguc -5' |
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7131 | 3' | -58.7 | NC_001895.1 | + | 1312 | 0.67 | 0.310963 |
Target: 5'- gGUCGGcGUgGCUGGCUUCcUCGCUg- -3' miRNA: 3'- -UAGCCaCAgUGGCCGAGGuAGCGGuc -5' |
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7131 | 3' | -58.7 | NC_001895.1 | + | 29345 | 0.71 | 0.18318 |
Target: 5'- -aCGGUuUCGCgCGGCUCCucuuucGUCGCCAu -3' miRNA: 3'- uaGCCAcAGUG-GCCGAGG------UAGCGGUc -5' |
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7131 | 3' | -58.7 | NC_001895.1 | + | 8901 | 0.74 | 0.113482 |
Target: 5'- cAUCGGgcggGUgACCGGCUCCggCGgCGGg -3' miRNA: 3'- -UAGCCa---CAgUGGCCGAGGuaGCgGUC- -5' |
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7131 | 3' | -58.7 | NC_001895.1 | + | 6896 | 0.76 | 0.080132 |
Target: 5'- -gCGGUGUgcggCAUCGGCUCCAugcuggguaUCGCCGGu -3' miRNA: 3'- uaGCCACA----GUGGCCGAGGU---------AGCGGUC- -5' |
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7131 | 3' | -58.7 | NC_001895.1 | + | 4282 | 1.05 | 0.000413 |
Target: 5'- uAUCGGUGUCACCGGCUCCAUCGCCAGc -3' miRNA: 3'- -UAGCCACAGUGGCCGAGGUAGCGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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