miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7131 5' -57.4 NC_001895.1 + 28922 0.66 0.465089
Target:  5'- cCAUUGCCGGU---AUUGAGCGUUcGCc -3'
miRNA:   3'- -GUGACGGCCAccaUGGCUCGCAGuCG- -5'
7131 5' -57.4 NC_001895.1 + 7637 0.66 0.458984
Target:  5'- -gUUGCCGGUGGUgugggcguguaugccACUGAGUaUguGCu -3'
miRNA:   3'- guGACGGCCACCA---------------UGGCUCGcAguCG- -5'
7131 5' -57.4 NC_001895.1 + 4936 0.66 0.454937
Target:  5'- gUACcGCUGGUaGGuUACCGAuGCGUUucuGGCu -3'
miRNA:   3'- -GUGaCGGCCA-CC-AUGGCU-CGCAG---UCG- -5'
7131 5' -57.4 NC_001895.1 + 4022 0.66 0.454937
Target:  5'- cCACcGCCGGUGGcuuUGCUGcGGCG-CuGCu -3'
miRNA:   3'- -GUGaCGGCCACC---AUGGC-UCGCaGuCG- -5'
7131 5' -57.4 NC_001895.1 + 12557 0.66 0.444907
Target:  5'- ---aGCCGGaaGGUGCCGGGCGggUCAc- -3'
miRNA:   3'- gugaCGGCCa-CCAUGGCUCGC--AGUcg -5'
7131 5' -57.4 NC_001895.1 + 11664 0.66 0.435001
Target:  5'- uCACUGCCGGUgucggcgggauGGUcgaucaucuGCCGGGgugauaGUCAGg -3'
miRNA:   3'- -GUGACGGCCA-----------CCA---------UGGCUCg-----CAGUCg -5'
7131 5' -57.4 NC_001895.1 + 6777 0.67 0.396699
Target:  5'- uGCuUGCCGGUGGUgaaccuaucACCccGCGUCuGUu -3'
miRNA:   3'- gUG-ACGGCCACCA---------UGGcuCGCAGuCG- -5'
7131 5' -57.4 NC_001895.1 + 19635 0.67 0.387468
Target:  5'- -cCUGCuCGGUcagcucGGUGCCGucauGCG-CGGCa -3'
miRNA:   3'- guGACG-GCCA------CCAUGGCu---CGCaGUCG- -5'
7131 5' -57.4 NC_001895.1 + 1737 0.67 0.378379
Target:  5'- gCACcGCCGGUGGUgGCCGguGGCaaauUCAGa -3'
miRNA:   3'- -GUGaCGGCCACCA-UGGC--UCGc---AGUCg -5'
7131 5' -57.4 NC_001895.1 + 7400 0.67 0.378379
Target:  5'- -cCUGCCG--GGUGCCGguuacggucAGCGUgAGCa -3'
miRNA:   3'- guGACGGCcaCCAUGGC---------UCGCAgUCG- -5'
7131 5' -57.4 NC_001895.1 + 12750 0.68 0.369435
Target:  5'- cCACUGCCGGUGcaGCaaAGCuggCAGCg -3'
miRNA:   3'- -GUGACGGCCACcaUGgcUCGca-GUCG- -5'
7131 5' -57.4 NC_001895.1 + 23 0.74 0.134295
Target:  5'- gCGCUGaCGGUGGUGCUGAuuguauuuuuucaGCGUCucAGCg -3'
miRNA:   3'- -GUGACgGCCACCAUGGCU-------------CGCAG--UCG- -5'
7131 5' -57.4 NC_001895.1 + 4317 1.1 0.000254
Target:  5'- aCACUGCCGGUGGUACCGAGCGUCAGCc -3'
miRNA:   3'- -GUGACGGCCACCAUGGCUCGCAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.