miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7133 3' -58.4 NC_001895.1 + 7783 0.66 0.443394
Target:  5'- aGUGGUGGUGGcgacguuuaucucgcUGGUcGCUGCCGG-GUg -3'
miRNA:   3'- gCACUGCCACC---------------ACUA-CGGCGGCCaCG- -5'
7133 3' -58.4 NC_001895.1 + 10460 0.66 0.439477
Target:  5'- --aGuCGGUGcacAUGCCGCCGGUcuGCa -3'
miRNA:   3'- gcaCuGCCACcacUACGGCGGCCA--CG- -5'
7133 3' -58.4 NC_001895.1 + 18278 0.66 0.439477
Target:  5'- gGUGGCGGUGGUacuGGUGaCCGUaucccaUGCg -3'
miRNA:   3'- gCACUGCCACCA---CUAC-GGCGgcc---ACG- -5'
7133 3' -58.4 NC_001895.1 + 1768 0.66 0.436551
Target:  5'- cCGUGGCGacagcgccggaugcGUGGUacUGgcaCCGCCGGUGg -3'
miRNA:   3'- -GCACUGC--------------CACCAcuAC---GGCGGCCACg -5'
7133 3' -58.4 NC_001895.1 + 12442 0.66 0.429769
Target:  5'- --cGGCGuGUGGUGGaGCCGCuCGGc-- -3'
miRNA:   3'- gcaCUGC-CACCACUaCGGCG-GCCacg -5'
7133 3' -58.4 NC_001895.1 + 4695 0.66 0.418289
Target:  5'- --aGA-GGUGGUGcggccuuccucgucaGUgaccuugcucaucacGCCGCCGGUGCu -3'
miRNA:   3'- gcaCUgCCACCAC---------------UA---------------CGGCGGCCACG- -5'
7133 3' -58.4 NC_001895.1 + 26209 0.67 0.347597
Target:  5'- uCGUGACGGcUGGuUGAUGUgGUuaggucuCGGUGa -3'
miRNA:   3'- -GCACUGCC-ACC-ACUACGgCG-------GCCACg -5'
7133 3' -58.4 NC_001895.1 + 17742 0.68 0.315983
Target:  5'- cCGUGgauACGGUGGaaAUGaCGCgGGUGCc -3'
miRNA:   3'- -GCAC---UGCCACCacUACgGCGgCCACG- -5'
7133 3' -58.4 NC_001895.1 + 12831 0.69 0.288771
Target:  5'- -aUGGCGGUGGUaaauugccugucccgGAUGCCGgacagaCCGG-GCu -3'
miRNA:   3'- gcACUGCCACCA---------------CUACGGC------GGCCaCG- -5'
7133 3' -58.4 NC_001895.1 + 6010 0.7 0.258054
Target:  5'- uCG-GGCGGUGGa-----CGCCGGUGCa -3'
miRNA:   3'- -GCaCUGCCACCacuacgGCGGCCACG- -5'
7133 3' -58.4 NC_001895.1 + 11508 0.7 0.250805
Target:  5'- aCG-GGCGGUGaUGcuggccuGUGCCGCCGGUa- -3'
miRNA:   3'- -GCaCUGCCACcAC-------UACGGCGGCCAcg -5'
7133 3' -58.4 NC_001895.1 + 9106 0.72 0.182742
Target:  5'- gCGUGGCGcGUagGGUG-UGCCGuCCGGgGCu -3'
miRNA:   3'- -GCACUGC-CA--CCACuACGGC-GGCCaCG- -5'
7133 3' -58.4 NC_001895.1 + 21622 0.83 0.028866
Target:  5'- uGUGGCcGUGGUGGcugccauUGUCGCCGGUGCg -3'
miRNA:   3'- gCACUGcCACCACU-------ACGGCGGCCACG- -5'
7133 3' -58.4 NC_001895.1 + 5682 1.12 0.000176
Target:  5'- gCGUGACGGUGGUGAUGCCGCCGGUGCg -3'
miRNA:   3'- -GCACUGCCACCACUACGGCGGCCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.