miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7133 5' -53.7 NC_001895.1 + 12434 0.66 0.655455
Target:  5'- gUGCAauccgGCGUGUGGuggaGCcGCUCGGCUa -3'
miRNA:   3'- gACGU-----UGCACGCUg---UGuCGAGCUGAc -5'
7133 5' -53.7 NC_001895.1 + 2933 0.66 0.643879
Target:  5'- -aGCAGCGccgccUGaCGACGCGGgUCGugUa -3'
miRNA:   3'- gaCGUUGC-----AC-GCUGUGUCgAGCugAc -5'
7133 5' -53.7 NC_001895.1 + 6513 0.67 0.563148
Target:  5'- uUGCGcuACaggGCGACAC-GCUCGACg- -3'
miRNA:   3'- gACGU--UGca-CGCUGUGuCGAGCUGac -5'
7133 5' -53.7 NC_001895.1 + 29637 0.68 0.518144
Target:  5'- uCUGCGGCGgcGCG-UGCAGCcUCGACg- -3'
miRNA:   3'- -GACGUUGCa-CGCuGUGUCG-AGCUGac -5'
7133 5' -53.7 NC_001895.1 + 10392 0.69 0.485351
Target:  5'- gCUGCcGCGUGCaGACcgGCGGCaugugcacCGACUGg -3'
miRNA:   3'- -GACGuUGCACG-CUG--UGUCGa-------GCUGAC- -5'
7133 5' -53.7 NC_001895.1 + 22171 0.73 0.282631
Target:  5'- aCUGCGcCG-GgGACACAGCUUGACc- -3'
miRNA:   3'- -GACGUuGCaCgCUGUGUCGAGCUGac -5'
7133 5' -53.7 NC_001895.1 + 6895 0.73 0.253857
Target:  5'- -aGCggUGUGCGGCAuCGGCUCcauGCUGg -3'
miRNA:   3'- gaCGuuGCACGCUGU-GUCGAGc--UGAC- -5'
7133 5' -53.7 NC_001895.1 + 5718 1.08 0.000809
Target:  5'- cCUGCAACGUGCGACACAGCUCGACUGu -3'
miRNA:   3'- -GACGUUGCACGCUGUGUCGAGCUGAC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.