Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7133 | 5' | -53.7 | NC_001895.1 | + | 12434 | 0.66 | 0.655455 |
Target: 5'- gUGCAauccgGCGUGUGGuggaGCcGCUCGGCUa -3' miRNA: 3'- gACGU-----UGCACGCUg---UGuCGAGCUGAc -5' |
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7133 | 5' | -53.7 | NC_001895.1 | + | 2933 | 0.66 | 0.643879 |
Target: 5'- -aGCAGCGccgccUGaCGACGCGGgUCGugUa -3' miRNA: 3'- gaCGUUGC-----AC-GCUGUGUCgAGCugAc -5' |
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7133 | 5' | -53.7 | NC_001895.1 | + | 6513 | 0.67 | 0.563148 |
Target: 5'- uUGCGcuACaggGCGACAC-GCUCGACg- -3' miRNA: 3'- gACGU--UGca-CGCUGUGuCGAGCUGac -5' |
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7133 | 5' | -53.7 | NC_001895.1 | + | 29637 | 0.68 | 0.518144 |
Target: 5'- uCUGCGGCGgcGCG-UGCAGCcUCGACg- -3' miRNA: 3'- -GACGUUGCa-CGCuGUGUCG-AGCUGac -5' |
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7133 | 5' | -53.7 | NC_001895.1 | + | 10392 | 0.69 | 0.485351 |
Target: 5'- gCUGCcGCGUGCaGACcgGCGGCaugugcacCGACUGg -3' miRNA: 3'- -GACGuUGCACG-CUG--UGUCGa-------GCUGAC- -5' |
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7133 | 5' | -53.7 | NC_001895.1 | + | 22171 | 0.73 | 0.282631 |
Target: 5'- aCUGCGcCG-GgGACACAGCUUGACc- -3' miRNA: 3'- -GACGUuGCaCgCUGUGUCGAGCUGac -5' |
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7133 | 5' | -53.7 | NC_001895.1 | + | 6895 | 0.73 | 0.253857 |
Target: 5'- -aGCggUGUGCGGCAuCGGCUCcauGCUGg -3' miRNA: 3'- gaCGuuGCACGCUGU-GUCGAGc--UGAC- -5' |
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7133 | 5' | -53.7 | NC_001895.1 | + | 5718 | 1.08 | 0.000809 |
Target: 5'- cCUGCAACGUGCGACACAGCUCGACUGu -3' miRNA: 3'- -GACGUUGCACGCUGUGUCGAGCUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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