miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7134 3' -65.5 NC_001895.1 + 18258 0.66 0.193376
Target:  5'- gCCCguGCGCUGGGGCuGCGCGCUa---- -3'
miRNA:   3'- -GGG--CGCGGUCCCGcCGUGCGGccagu -5'
7134 3' -65.5 NC_001895.1 + 3349 0.66 0.193376
Target:  5'- gCCGCGCagauguucCAGGuuaauGCGGCaaccauagacACGCgGGUCAa -3'
miRNA:   3'- gGGCGCG--------GUCC-----CGCCG----------UGCGgCCAGU- -5'
7134 3' -65.5 NC_001895.1 + 6020 0.66 0.193376
Target:  5'- cUCUGaaaaGUC-GGGCGGUggACGCCGGUgCAg -3'
miRNA:   3'- -GGGCg---CGGuCCCGCCG--UGCGGCCA-GU- -5'
7134 3' -65.5 NC_001895.1 + 19360 0.66 0.183603
Target:  5'- aUCCG-GUCAGccUGGCugGCCGGUUAa -3'
miRNA:   3'- -GGGCgCGGUCccGCCGugCGGCCAGU- -5'
7134 3' -65.5 NC_001895.1 + 10894 0.66 0.17427
Target:  5'- cCCCgGCGaCAGcGGCGGCACaaCCGGg-- -3'
miRNA:   3'- -GGG-CGCgGUC-CCGCCGUGc-GGCCagu -5'
7134 3' -65.5 NC_001895.1 + 19942 0.66 0.169764
Target:  5'- gCUGUGCgGauggauuuaaacGGGCGGgAUGCCuGGUCAa -3'
miRNA:   3'- gGGCGCGgU------------CCCGCCgUGCGG-CCAGU- -5'
7134 3' -65.5 NC_001895.1 + 2989 0.66 0.169764
Target:  5'- aCCCGCGUCGucaGGCGGCGCuGCUGu--- -3'
miRNA:   3'- -GGGCGCGGUc--CCGCCGUG-CGGCcagu -5'
7134 3' -65.5 NC_001895.1 + 21593 0.67 0.148765
Target:  5'- aCCGCcaUCGGGGCuauuaGCugGCCGGUUg -3'
miRNA:   3'- gGGCGc-GGUCCCGc----CGugCGGCCAGu -5'
7134 3' -65.5 NC_001895.1 + 11137 0.68 0.120048
Target:  5'- --aGCGCCGGGGUcuGCG-GCUGGUCAa -3'
miRNA:   3'- gggCGCGGUCCCGc-CGUgCGGCCAGU- -5'
7134 3' -65.5 NC_001895.1 + 12782 0.69 0.113719
Target:  5'- aCCGCGCCGGGaaGGCG-GaaGGUCGg -3'
miRNA:   3'- gGGCGCGGUCCcgCCGUgCggCCAGU- -5'
7134 3' -65.5 NC_001895.1 + 8318 0.69 0.107703
Target:  5'- aCUgGCGUCGGugcaGGCGGgGCGCUGGUgCAa -3'
miRNA:   3'- -GGgCGCGGUC----CCGCCgUGCGGCCA-GU- -5'
7134 3' -65.5 NC_001895.1 + 20625 0.71 0.06913
Target:  5'- gCCGguggggauguugaUGCCAuucaGGCGGCaACGCCGGUCAc -3'
miRNA:   3'- gGGC-------------GCGGUc---CCGCCG-UGCGGCCAGU- -5'
7134 3' -65.5 NC_001895.1 + 5908 1.09 0.00006
Target:  5'- cCCCGCGCCAGGGCGGCACGCCGGUCAg -3'
miRNA:   3'- -GGGCGCGGUCCCGCCGUGCGGCCAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.