miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7134 5' -55.8 NC_001895.1 + 21448 0.66 0.540208
Target:  5'- cAUUGCC-GGCGgUGCACUGGCG-CUu -3'
miRNA:   3'- uUAGUGGaCUGUgACGUGGCCGCaGG- -5'
7134 5' -55.8 NC_001895.1 + 6979 0.66 0.52913
Target:  5'- cAAUCACCUGAUA----ACCGGCGauacCCa -3'
miRNA:   3'- -UUAGUGGACUGUgacgUGGCCGCa---GG- -5'
7134 5' -55.8 NC_001895.1 + 13598 0.66 0.518137
Target:  5'- cGUCGCCUGACgcacugaauacGCUGaacgaGCUGGCGg-- -3'
miRNA:   3'- uUAGUGGACUG-----------UGACg----UGGCCGCagg -5'
7134 5' -55.8 NC_001895.1 + 7536 0.66 0.518137
Target:  5'- uGUCG-CUGGCGCUGaUGCUGGCacuGUCCc -3'
miRNA:   3'- uUAGUgGACUGUGAC-GUGGCCG---CAGG- -5'
7134 5' -55.8 NC_001895.1 + 5214 0.66 0.507236
Target:  5'- cAUCAUgUGGCGCUGUGCgGGacuCGUCa -3'
miRNA:   3'- uUAGUGgACUGUGACGUGgCC---GCAGg -5'
7134 5' -55.8 NC_001895.1 + 1917 0.67 0.47515
Target:  5'- gAAUUugUUGACGacaagGCAUCGGUGUUCc -3'
miRNA:   3'- -UUAGugGACUGUga---CGUGGCCGCAGG- -5'
7134 5' -55.8 NC_001895.1 + 4300 0.67 0.463639
Target:  5'- cAUCGCCagcacuaccGACACUGCcggugguACCGaGCGUCa -3'
miRNA:   3'- uUAGUGGa--------CUGUGACG-------UGGC-CGCAGg -5'
7134 5' -55.8 NC_001895.1 + 13411 0.67 0.454331
Target:  5'- ---gGCCUuuucGCGCUGUGgUGGCGUCCu -3'
miRNA:   3'- uuagUGGAc---UGUGACGUgGCCGCAGG- -5'
7134 5' -55.8 NC_001895.1 + 29996 0.67 0.444109
Target:  5'- cAUCaACCaGauuaaGCACUGCugCGGCGUgCu -3'
miRNA:   3'- uUAG-UGGaC-----UGUGACGugGCCGCAgG- -5'
7134 5' -55.8 NC_001895.1 + 29427 0.68 0.414239
Target:  5'- --cCGCUgaaaGACACUGCugCGGCuGUUa -3'
miRNA:   3'- uuaGUGGa---CUGUGACGugGCCG-CAGg -5'
7134 5' -55.8 NC_001895.1 + 20662 0.68 0.404561
Target:  5'- cGGUCACgCUGaACAUgGCGCUGGCGaaCCg -3'
miRNA:   3'- -UUAGUG-GAC-UGUGaCGUGGCCGCa-GG- -5'
7134 5' -55.8 NC_001895.1 + 22152 0.68 0.394081
Target:  5'- cAUCAgCCUGACgggggggACUGCGCCGGgGa-- -3'
miRNA:   3'- uUAGU-GGACUG-------UGACGUGGCCgCagg -5'
7134 5' -55.8 NC_001895.1 + 3995 0.7 0.300147
Target:  5'- --aCGCCcugaUGACgaACUGCugACCGGCGUCa -3'
miRNA:   3'- uuaGUGG----ACUG--UGACG--UGGCCGCAGg -5'
7134 5' -55.8 NC_001895.1 + 18753 0.7 0.292452
Target:  5'- ---aACCUGACcCUGCGCCaGCGUauuaCCg -3'
miRNA:   3'- uuagUGGACUGuGACGUGGcCGCA----GG- -5'
7134 5' -55.8 NC_001895.1 + 5977 0.72 0.23006
Target:  5'- -uUCACCgu-CACUG-ACCGGCGUgCCg -3'
miRNA:   3'- uuAGUGGacuGUGACgUGGCCGCA-GG- -5'
7134 5' -55.8 NC_001895.1 + 5943 1.1 0.000335
Target:  5'- gAAUCACCUGACACUGCACCGGCGUCCa -3'
miRNA:   3'- -UUAGUGGACUGUGACGUGGCCGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.