miRNA: 3'- ugGCUGAUGUcaCUGGUGGGCAa--GCG- -5'
miRNA: 3'- -UGGCUGAUGUCac--UGGUGGGCa-----AGCG- -5'
miRNA: 3'- -UGGCUGa-UGUCa--CUgGUGGgCAAGCG- -5'
miRNA: 3'- -UGGCUGAU----GUCACUGG-UGGG------------CAAGCG- -5'
miRNA: 3'- -UGGCUGAUGUCACUGGUGGGCAAGCG- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7135 | 3' | -54.2 | NC_001895.1 | + | 30115 | 0.67 | 0.57429 |
|
Target: 5'- -aCGAUUGCA--GAUCACCCGUaucCGCg -3' miRNA: 3'- ugGCUGAUGUcaCUGGUGGGCAa--GCG- -5' |
|||||||
| 7135 | 3' | -54.2 | NC_001895.1 | + | 14497 | 0.68 | 0.529727 |
|
Target: 5'- cGCUGGCUAUAGaaauGCCAUCCGgccucaUCGCc -3' miRNA: 3'- -UGGCUGAUGUCac--UGGUGGGCa-----AGCG- -5' |
|||||||
| 7135 | 3' | -54.2 | NC_001895.1 | + | 22936 | 0.69 | 0.486494 |
|
Target: 5'- uGCCGACggGCAGgucGGgUGCCgGUUCGUg -3' miRNA: 3'- -UGGCUGa-UGUCa--CUgGUGGgCAAGCG- -5' |
|||||||
| 7135 | 3' | -54.2 | NC_001895.1 | + | 10420 | 0.75 | 0.213148 |
|
Target: 5'- cACCGACUGgcuuCAGUGGCUgACCCaucgcgcaggacGUUCGCg -3' miRNA: 3'- -UGGCUGAU----GUCACUGG-UGGG------------CAAGCG- -5' |
|||||||
| 7135 | 3' | -54.2 | NC_001895.1 | + | 7133 | 1.12 | 0.000444 |
|
Target: 5'- cACCGACUACAGUGACCACCCGUUCGCa -3' miRNA: 3'- -UGGCUGAUGUCACUGGUGGGCAAGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home