miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7137 5' -57.9 NC_001895.1 + 8999 0.66 0.410102
Target:  5'- aAACGUCugcggcagaGUCAGCaGcGUCGGguGAUGGCa -3'
miRNA:   3'- -UUGCAG---------CGGUCG-C-CAGUCguCUGCUG- -5'
7137 5' -57.9 NC_001895.1 + 12658 0.66 0.400579
Target:  5'- ---uUCGCCGGUGGUgUGGCuuacGACGGCg -3'
miRNA:   3'- uugcAGCGGUCGCCA-GUCGu---CUGCUG- -5'
7137 5' -57.9 NC_001895.1 + 13715 0.66 0.389339
Target:  5'- uGACGgCGCUGGCGGggcuugcuacugCGGCAGACa-- -3'
miRNA:   3'- -UUGCaGCGGUCGCCa-----------GUCGUCUGcug -5'
7137 5' -57.9 NC_001895.1 + 2691 0.67 0.372871
Target:  5'- gAACGUCGCUAaCcGUaacaaaGGCGGACGGCg -3'
miRNA:   3'- -UUGCAGCGGUcGcCAg-----UCGUCUGCUG- -5'
7137 5' -57.9 NC_001895.1 + 4560 0.67 0.346496
Target:  5'- cGAUGUUGCaggauguGGCGGUCGGCuGGCuGCa -3'
miRNA:   3'- -UUGCAGCGg------UCGCCAGUCGuCUGcUG- -5'
7137 5' -57.9 NC_001895.1 + 20727 0.67 0.346496
Target:  5'- cGACGguUCGCCAGCGccauguUCAGCGuGAcCGGCg -3'
miRNA:   3'- -UUGC--AGCGGUCGCc-----AGUCGU-CU-GCUG- -5'
7137 5' -57.9 NC_001895.1 + 2083 0.67 0.340537
Target:  5'- cGACGUCagucauaacgcccuuGCCGGUGGgcuucucUguGCGGACGGCc -3'
miRNA:   3'- -UUGCAG---------------CGGUCGCC-------AguCGUCUGCUG- -5'
7137 5' -57.9 NC_001895.1 + 380 0.67 0.329668
Target:  5'- uGCG-CGuCCAGCaGGUCAGCGGcGCuGGCu -3'
miRNA:   3'- uUGCaGC-GGUCG-CCAGUCGUC-UG-CUG- -5'
7137 5' -57.9 NC_001895.1 + 1295 0.68 0.297846
Target:  5'- cAugGUCGCCcaGGCgaGGUCGGCGuGGCuGGCu -3'
miRNA:   3'- -UugCAGCGG--UCG--CCAGUCGU-CUG-CUG- -5'
7137 5' -57.9 NC_001895.1 + 6884 0.7 0.222719
Target:  5'- -cUGUCacuGCCAGCGGUguGCGGcauCGGCu -3'
miRNA:   3'- uuGCAG---CGGUCGCCAguCGUCu--GCUG- -5'
7137 5' -57.9 NC_001895.1 + 12153 0.72 0.159768
Target:  5'- cGAUGUCgGCCAGUGGUgCAGcCAGuuCGACa -3'
miRNA:   3'- -UUGCAG-CGGUCGCCA-GUC-GUCu-GCUG- -5'
7137 5' -57.9 NC_001895.1 + 7511 0.73 0.146754
Target:  5'- uACGcCGCCAGCGGUaCGcCAGACGGu -3'
miRNA:   3'- uUGCaGCGGUCGCCA-GUcGUCUGCUg -5'
7137 5' -57.9 NC_001895.1 + 8024 1.06 0.000415
Target:  5'- cAACGUCGCCAGCGGUCAGCAGACGACc -3'
miRNA:   3'- -UUGCAGCGGUCGCCAGUCGUCUGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.