miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7139 3' -57.8 NC_001895.1 + 8629 0.66 0.446654
Target:  5'- uGACCUgcucauugUGCCGGU-GCUGgCGUGg -3'
miRNA:   3'- gCUGGAauu-----GCGGCCAgCGACgGCGC- -5'
7139 3' -57.8 NC_001895.1 + 12263 0.66 0.43583
Target:  5'- gCGACCUcaagcggUGAUgaGCCGGUCggcaGCaGUCGCGa -3'
miRNA:   3'- -GCUGGA-------AUUG--CGGCCAG----CGaCGGCGC- -5'
7139 3' -57.8 NC_001895.1 + 19026 0.66 0.432905
Target:  5'- aGGCCgaggucuaCCGGUgCGCUGCCGUu -3'
miRNA:   3'- gCUGGaauugc--GGCCA-GCGACGGCGc -5'
7139 3' -57.8 NC_001895.1 + 1342 0.66 0.427089
Target:  5'- uGGCCUcauaggUGGCGCUGcGUcCGCUGCUGg- -3'
miRNA:   3'- gCUGGA------AUUGCGGC-CA-GCGACGGCgc -5'
7139 3' -57.8 NC_001895.1 + 12839 0.67 0.417498
Target:  5'- cCGACCUUccgccuucccGGCG-CGGUUGCcGCUGCc -3'
miRNA:   3'- -GCUGGAA----------UUGCgGCCAGCGaCGGCGc -5'
7139 3' -57.8 NC_001895.1 + 13289 0.67 0.417498
Target:  5'- uGGCCgcAACGCCGaaaGCgguaaagGCCGCGu -3'
miRNA:   3'- gCUGGaaUUGCGGCcagCGa------CGGCGC- -5'
7139 3' -57.8 NC_001895.1 + 4027 0.67 0.398718
Target:  5'- -cACCgccacCGCCGGUgGCuuUGCUGCGg -3'
miRNA:   3'- gcUGGaauu-GCGGCCAgCG--ACGGCGC- -5'
7139 3' -57.8 NC_001895.1 + 12202 0.68 0.342388
Target:  5'- cCGACCggcucaucacCGCUugaGGUCGCcGCCGCa -3'
miRNA:   3'- -GCUGGaauu------GCGG---CCAGCGaCGGCGc -5'
7139 3' -57.8 NC_001895.1 + 21603 0.69 0.305584
Target:  5'- gGGCUaUUAGCugGCCGGUUGUgGCCGUGg -3'
miRNA:   3'- gCUGG-AAUUG--CGGCCAGCGaCGGCGC- -5'
7139 3' -57.8 NC_001895.1 + 7693 0.69 0.297995
Target:  5'- gGAgCUgc-CGCCGGaaUCGCUGgCCGUGa -3'
miRNA:   3'- gCUgGAauuGCGGCC--AGCGAC-GGCGC- -5'
7139 3' -57.8 NC_001895.1 + 7793 0.79 0.064806
Target:  5'- gCGACgUUuaucuCGCUGGUCGCUGCCGgGu -3'
miRNA:   3'- -GCUGgAAuu---GCGGCCAGCGACGGCgC- -5'
7139 3' -57.8 NC_001895.1 + 10374 1.08 0.000368
Target:  5'- cCGACCUUAACGCCGGUCGCUGCCGCGu -3'
miRNA:   3'- -GCUGGAAUUGCGGCCAGCGACGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.