Results 1 - 6 of 6 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7140 | 5' | -59.5 | NC_001895.1 | + | 4384 | 0.66 | 0.346392 |
Target: 5'- gUCCUucgGCUGACgcucgguaccACCGGCAGUgucgguagugcuggcGAUGGAGc -3' miRNA: 3'- -AGGG---CGGCUG----------UGGCCGUCA---------------CUACCUU- -5' |
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7140 | 5' | -59.5 | NC_001895.1 | + | 12503 | 0.66 | 0.326538 |
Target: 5'- aCCCGcCCGGCAccuuCCGGCuugauauuGGUGuacUGGAAa -3' miRNA: 3'- aGGGC-GGCUGU----GGCCG--------UCACu--ACCUU- -5' |
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7140 | 5' | -59.5 | NC_001895.1 | + | 20466 | 0.68 | 0.245794 |
Target: 5'- uUCCCGCCGccgcaauccccACACCGGCAGcgcccacUGA-GGc- -3' miRNA: 3'- -AGGGCGGC-----------UGUGGCCGUC-------ACUaCCuu -5' |
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7140 | 5' | -59.5 | NC_001895.1 | + | 1254 | 0.7 | 0.173513 |
Target: 5'- --gUGCUGAUACCGGCGGUGAgUGGc- -3' miRNA: 3'- aggGCGGCUGUGGCCGUCACU-ACCuu -5' |
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7140 | 5' | -59.5 | NC_001895.1 | + | 12812 | 0.72 | 0.127506 |
Target: 5'- -gCCGCUGccagcuuugcuGCACCGGCAGUGGUGa-- -3' miRNA: 3'- agGGCGGC-----------UGUGGCCGUCACUACcuu -5' |
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7140 | 5' | -59.5 | NC_001895.1 | + | 11611 | 1.06 | 0.000293 |
Target: 5'- aUCCCGCCGACACCGGCAGUGAUGGAAu -3' miRNA: 3'- -AGGGCGGCUGUGGCCGUCACUACCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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