Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7141 | 3' | -54.6 | NC_001895.1 | + | 5175 | 0.66 | 0.571449 |
Target: 5'- uCCCGgcUCUGCGgUcgccuuaGCCGgUGUGGAGAAg -3' miRNA: 3'- -GGGU--AGGCGCgA-------CGGCgACACUUUUU- -5' |
|||||||
7141 | 3' | -54.6 | NC_001895.1 | + | 23071 | 0.67 | 0.494241 |
Target: 5'- aCCAUCCGCGC--CCGgaGUGcAGAu -3' miRNA: 3'- gGGUAGGCGCGacGGCgaCACuUUUu -5' |
|||||||
7141 | 3' | -54.6 | NC_001895.1 | + | 5551 | 0.68 | 0.462151 |
Target: 5'- gCCAUgCGCGCUcacGCUGCcgGUGAGu-- -3' miRNA: 3'- gGGUAgGCGCGA---CGGCGa-CACUUuuu -5' |
|||||||
7141 | 3' | -54.6 | NC_001895.1 | + | 19896 | 0.68 | 0.4517 |
Target: 5'- aUCCAUCCGCacaGCgagcaaGUCGCUGUcGggGGAu -3' miRNA: 3'- -GGGUAGGCG---CGa-----CGGCGACA-CuuUUU- -5' |
|||||||
7141 | 3' | -54.6 | NC_001895.1 | + | 1713 | 0.69 | 0.382411 |
Target: 5'- aCgCAUCCgGCGCUGUCGCcacggUGUGAc--- -3' miRNA: 3'- -GgGUAGG-CGCGACGGCG-----ACACUuuuu -5' |
|||||||
7141 | 3' | -54.6 | NC_001895.1 | + | 20392 | 0.71 | 0.304331 |
Target: 5'- cCUCAguggGCGCUGCCGgUGUGggGAu -3' miRNA: 3'- -GGGUagg-CGCGACGGCgACACuuUUu -5' |
|||||||
7141 | 3' | -54.6 | NC_001895.1 | + | 11970 | 0.96 | 0.005132 |
Target: 5'- aCCCAU-CGCGCUGCCGCUGUGAAAAAg -3' miRNA: 3'- -GGGUAgGCGCGACGGCGACACUUUUU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home