miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7141 5' -54.1 NC_001895.1 + 26522 0.66 0.630514
Target:  5'- ---uUAUC-CGGCGCauAGCuGCUGGCUGu -3'
miRNA:   3'- gcauAUAGuGCCGUG--UCG-UGGCCGAC- -5'
7141 5' -54.1 NC_001895.1 + 17876 0.66 0.629359
Target:  5'- cCGU-UGUCAUGcGCguggaagACGGCACCGGUg- -3'
miRNA:   3'- -GCAuAUAGUGC-CG-------UGUCGUGGCCGac -5'
7141 5' -54.1 NC_001895.1 + 21876 0.66 0.61897
Target:  5'- gCGUcAUGUUcgGGCA-GGCACUGGCUGa -3'
miRNA:   3'- -GCA-UAUAGugCCGUgUCGUGGCCGAC- -5'
7141 5' -54.1 NC_001895.1 + 5767 0.66 0.61897
Target:  5'- uGUGUcgCACGuuGCAggugcgccagcGCACCGGCg- -3'
miRNA:   3'- gCAUAuaGUGCcgUGU-----------CGUGGCCGac -5'
7141 5' -54.1 NC_001895.1 + 21706 0.67 0.573024
Target:  5'- aGUAU-UUACGGauaaGCAacGCACCGGCg- -3'
miRNA:   3'- gCAUAuAGUGCCg---UGU--CGUGGCCGac -5'
7141 5' -54.1 NC_001895.1 + 18932 0.67 0.546949
Target:  5'- cCGUAagcucgaaaacUAUCGCGGUGCGgggugaacggcagcGCACCGGUa- -3'
miRNA:   3'- -GCAU-----------AUAGUGCCGUGU--------------CGUGGCCGac -5'
7141 5' -54.1 NC_001895.1 + 7765 0.68 0.516844
Target:  5'- aCGUGacaaucuUCACGGC-CAGCGauuCCGGCg- -3'
miRNA:   3'- -GCAUau-----AGUGCCGuGUCGU---GGCCGac -5'
7141 5' -54.1 NC_001895.1 + 21222 0.69 0.422123
Target:  5'- gCGgcaGUCAuCaGCACGGCAgCGGCUGa -3'
miRNA:   3'- -GCauaUAGU-GcCGUGUCGUgGCCGAC- -5'
7141 5' -54.1 NC_001895.1 + 25111 0.72 0.297691
Target:  5'- -----uUCGggUGGCGCAGUACUGGCUGa -3'
miRNA:   3'- gcauauAGU--GCCGUGUCGUGGCCGAC- -5'
7141 5' -54.1 NC_001895.1 + 7799 0.72 0.289979
Target:  5'- ----cGUCuGCGcCACGGCACCGGCUGc -3'
miRNA:   3'- gcauaUAG-UGCcGUGUCGUGGCCGAC- -5'
7141 5' -54.1 NC_001895.1 + 1101 0.79 0.10166
Target:  5'- --aAUGUCACGGCGgucgaguacCGGCACCGGCUc -3'
miRNA:   3'- gcaUAUAGUGCCGU---------GUCGUGGCCGAc -5'
7141 5' -54.1 NC_001895.1 + 22085 0.8 0.08246
Target:  5'- aGgcuUAUCAgcCGGuCACGGCACCGGCUGg -3'
miRNA:   3'- gCau-AUAGU--GCC-GUGUCGUGGCCGAC- -5'
7141 5' -54.1 NC_001895.1 + 12003 1.09 0.000604
Target:  5'- gCGUAUAUCACGGCACAGCACCGGCUGg -3'
miRNA:   3'- -GCAUAUAGUGCCGUGUCGUGGCCGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.