miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7142 5' -50.8 NC_001895.1 + 23135 0.66 0.84217
Target:  5'- ---aUGACACCACGcuCGGUGcgauuguuaaGGCGa -3'
miRNA:   3'- gguaACUGUGGUGUu-GCCACua--------CCGC- -5'
7142 5' -50.8 NC_001895.1 + 19492 0.66 0.832801
Target:  5'- cCCAgugccggGACGCUAC-GCGGUGucagucUGGCu -3'
miRNA:   3'- -GGUaa-----CUGUGGUGuUGCCACu-----ACCGc -5'
7142 5' -50.8 NC_001895.1 + 7753 0.66 0.813362
Target:  5'- gCCG-UGGCGCagacggGCGGCGGcucugguaguggUGGUGGCGa -3'
miRNA:   3'- -GGUaACUGUGg-----UGUUGCC------------ACUACCGC- -5'
7142 5' -50.8 NC_001895.1 + 12805 0.66 0.813362
Target:  5'- ----cGGCauuACCACGAUGGccgucgggGAUGGCGg -3'
miRNA:   3'- gguaaCUG---UGGUGUUGCCa-------CUACCGC- -5'
7142 5' -50.8 NC_001895.1 + 1257 0.67 0.77202
Target:  5'- ---cUGAUACCG--GCGGUGAgUGGCu -3'
miRNA:   3'- gguaACUGUGGUguUGCCACU-ACCGc -5'
7142 5' -50.8 NC_001895.1 + 1611 0.68 0.750321
Target:  5'- gUAUUGAUGCCACcggccuCGGUGucGGCGu -3'
miRNA:   3'- gGUAACUGUGGUGuu----GCCACuaCCGC- -5'
7142 5' -50.8 NC_001895.1 + 21591 0.68 0.750321
Target:  5'- cCCAUUG-CGCCugcuGCcGCGaUGAUGGCa -3'
miRNA:   3'- -GGUAACuGUGG----UGuUGCcACUACCGc -5'
7142 5' -50.8 NC_001895.1 + 19276 0.68 0.728082
Target:  5'- -aAUUGACACCAuCAACaugauugagaaGGUGAacGGCGu -3'
miRNA:   3'- ggUAACUGUGGU-GUUG-----------CCACUa-CCGC- -5'
7142 5' -50.8 NC_001895.1 + 3957 0.68 0.705411
Target:  5'- cCCAgcaGCGCCGCAGCaaagccaccGGcGGUGGCGu -3'
miRNA:   3'- -GGUaacUGUGGUGUUG---------CCaCUACCGC- -5'
7142 5' -50.8 NC_001895.1 + 21909 0.7 0.623047
Target:  5'- gCCcgUGuCACgGCAACGGUucaggguguccugGGUGGCu -3'
miRNA:   3'- -GGuaACuGUGgUGUUGCCA-------------CUACCGc -5'
7142 5' -50.8 NC_001895.1 + 20878 0.7 0.589288
Target:  5'- gCAUUGAagaaacCGCCGCAAUGGUcggGGCGc -3'
miRNA:   3'- gGUAACU------GUGGUGUUGCCAcuaCCGC- -5'
7142 5' -50.8 NC_001895.1 + 11498 0.71 0.566188
Target:  5'- ---aUGAgGCCGCAcggGCGGUGAugcUGGCc -3'
miRNA:   3'- gguaACUgUGGUGU---UGCCACU---ACCGc -5'
7142 5' -50.8 NC_001895.1 + 21437 0.71 0.543327
Target:  5'- aCCAUcGGCAUCAuugcCGGCGGUGcacUGGCGc -3'
miRNA:   3'- -GGUAaCUGUGGU----GUUGCCACu--ACCGC- -5'
7142 5' -50.8 NC_001895.1 + 1740 0.75 0.331372
Target:  5'- ---cUGGCACCGC--CGGUGGUGGCc -3'
miRNA:   3'- gguaACUGUGGUGuuGCCACUACCGc -5'
7142 5' -50.8 NC_001895.1 + 13138 1.13 0.000969
Target:  5'- aCCAUUGACACCACAACGGUGAUGGCGa -3'
miRNA:   3'- -GGUAACUGUGGUGUUGCCACUACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.