miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7144 3' -51 NC_001895.1 + 25568 0.66 0.825905
Target:  5'- aACCAGUCuuuuGACCGGaguggggCGaCGUUGUUu -3'
miRNA:   3'- -UGGUCAGuu--UUGGCCa------GUgGCAACAG- -5'
7144 3' -51 NC_001895.1 + 8841 0.66 0.825905
Target:  5'- cGCC-GcCGGAGCCGGUCACCc----- -3'
miRNA:   3'- -UGGuCaGUUUUGGCCAGUGGcaacag -5'
7144 3' -51 NC_001895.1 + 21812 0.66 0.825905
Target:  5'- aGCCAGUCAAAAaCCGGUUuaAgUGgcGUg -3'
miRNA:   3'- -UGGUCAGUUUU-GGCCAG--UgGCaaCAg -5'
7144 3' -51 NC_001895.1 + 11236 0.66 0.816055
Target:  5'- cGCCcGUCAAAACUGcG-CGCCGUgGUg -3'
miRNA:   3'- -UGGuCAGUUUUGGC-CaGUGGCAaCAg -5'
7144 3' -51 NC_001895.1 + 22114 0.66 0.816055
Target:  5'- aGCCuG-CAuaaGAGCUGGUCGCCGgaauauaGUCa -3'
miRNA:   3'- -UGGuCaGU---UUUGGCCAGUGGCaa-----CAG- -5'
7144 3' -51 NC_001895.1 + 11876 0.66 0.805984
Target:  5'- gGCCGGUgGccGACCGcGUgACCGUgcaGUCu -3'
miRNA:   3'- -UGGUCAgUu-UUGGC-CAgUGGCAa--CAG- -5'
7144 3' -51 NC_001895.1 + 8430 0.67 0.77779
Target:  5'- uGCCAGcgcguucUCAAGcuGCCGGauaucggcacuuaaaUCGCCGUUcGUCu -3'
miRNA:   3'- -UGGUC-------AGUUU--UGGCC---------------AGUGGCAA-CAG- -5'
7144 3' -51 NC_001895.1 + 10464 0.67 0.73829
Target:  5'- aGCCAGUCGGugcacaugccGCCGGUCugcacgcggcagcgACCGgcGUUa -3'
miRNA:   3'- -UGGUCAGUUu---------UGGCCAG--------------UGGCaaCAG- -5'
7144 3' -51 NC_001895.1 + 17906 0.69 0.649311
Target:  5'- gACCGGUUuuGACUGGUCAgCGaUGg- -3'
miRNA:   3'- -UGGUCAGuuUUGGCCAGUgGCaACag -5'
7144 3' -51 NC_001895.1 + 7208 0.71 0.510234
Target:  5'- cGCCGGUCGgccaugugcGAACgggUGGUCACUGUaGUCg -3'
miRNA:   3'- -UGGUCAGU---------UUUG---GCCAGUGGCAaCAG- -5'
7144 3' -51 NC_001895.1 + 17857 1.11 0.001079
Target:  5'- gACCAGUCAAAACCGGUCACCGUUGUCa -3'
miRNA:   3'- -UGGUCAGUUUUGGCCAGUGGCAACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.