miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
7144	5'	-54.1	NC_001895.1	+	20381	0.66	0.680238
	Target:  5'- cGGAaauauggccucAGugGGCGCUGccGGUGugGGGa -3' miRNA:   3'- -CCU-----------UCugCCGUGGCcaCUACugCUCc -5'
7144	5'	-54.1	NC_001895.1	+	5916	0.66	0.66903
	Target:  5'- -cAGGGCGGCacGCCGGUcaGUGACGGu- -3' miRNA:   3'- ccUUCUGCCG--UGGCCAc-UACUGCUcc -5'
7144	5'	-54.1	NC_001895.1	+	12797	0.69	0.506625
	Target:  5'- cGGAAGGuCGGCAuuaccacgauggccgUCGGgGAUGGCGGuGGu -3' miRNA:   3'- -CCUUCU-GCCGU---------------GGCCaCUACUGCU-CC- -5'
7144	5'	-54.1	NC_001895.1	+	7766	0.69	0.502356
	Target:  5'- cGGgcGGCGGCucugguAgUGGUGGUGGCGAc- -3' miRNA:   3'- -CCuuCUGCCG------UgGCCACUACUGCUcc -5'
7144	5'	-54.1	NC_001895.1	+	7617	0.69	0.490695
	Target:  5'- uGgcGACGGUuaucugugugguuGCCGGUGGUGugGGc- -3' miRNA:   3'- cCuuCUGCCG-------------UGGCCACUACugCUcc -5'
7144	5'	-54.1	NC_001895.1	+	11826	0.73	0.313847
	Target:  5'- cGAAGACcugcuGGCugUGGUGcguaacgcccuuaAUGGCGAGGa -3' miRNA:   3'- cCUUCUG-----CCGugGCCAC-------------UACUGCUCC- -5'
7144	5'	-54.1	NC_001895.1	+	17891	1.13	0.000456
	Target:  5'- uGGAAGACGGCACCGGUGAUGACGAGGa -3' miRNA:   3'- -CCUUCUGCCGUGGCCACUACUGCUCC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home