miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7145 3' -60.8 NC_001895.1 + 12204 0.66 0.324287
Target:  5'- gACCGgcucaUCACCGCuugagGUCGCCGCCg -3'
miRNA:   3'- gUGGC-----GGUGGCGcaua-CGGUGGCGGg -5'
7145 3' -60.8 NC_001895.1 + 21893 0.66 0.324287
Target:  5'- gCACUGgCugaCGCGUugAUGCUGCCGCUUa -3'
miRNA:   3'- -GUGGCgGug-GCGCA--UACGGUGGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 21618 0.66 0.308797
Target:  5'- aCACUGCCaACCGuCGUGaagacUGCCcccauugcgccuGCUGCCg -3'
miRNA:   3'- -GUGGCGG-UGGC-GCAU-----ACGG------------UGGCGGg -5'
7145 3' -60.8 NC_001895.1 + 1760 0.67 0.286632
Target:  5'- aCAgCGCCGgaUGCGUGguacUGgCACCGCCg -3'
miRNA:   3'- -GUgGCGGUg-GCGCAU----ACgGUGGCGGg -5'
7145 3' -60.8 NC_001895.1 + 6680 0.67 0.272564
Target:  5'- aCGgCGgUGCCGUGUG-GCagCACCGCCCc -3'
miRNA:   3'- -GUgGCgGUGGCGCAUaCG--GUGGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 29425 0.67 0.26574
Target:  5'- gACCGCUgaaagacacuGCUGCGgcUGUUACCGCa- -3'
miRNA:   3'- gUGGCGG----------UGGCGCauACGGUGGCGgg -5'
7145 3' -60.8 NC_001895.1 + 18579 0.67 0.259055
Target:  5'- gCGCCucaGCCAUCGUGUcgGCCA-CGaCCUg -3'
miRNA:   3'- -GUGG---CGGUGGCGCAuaCGGUgGC-GGG- -5'
7145 3' -60.8 NC_001895.1 + 11876 0.67 0.252508
Target:  5'- gGCCggugGCCgACCGCGUgaccGUGCagucuGCCGCCa -3'
miRNA:   3'- gUGG----CGG-UGGCGCA----UACGg----UGGCGGg -5'
7145 3' -60.8 NC_001895.1 + 20479 0.68 0.227674
Target:  5'- aCACCgGCCAUCGUucccGCCGCCGCa- -3'
miRNA:   3'- -GUGG-CGGUGGCGcauaCGGUGGCGgg -5'
7145 3' -60.8 NC_001895.1 + 3680 0.68 0.221798
Target:  5'- gACCuGCCugaaACCGUGU---UCACCGCCCu -3'
miRNA:   3'- gUGG-CGG----UGGCGCAuacGGUGGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 6515 0.69 0.204397
Target:  5'- gCGCgGCUugCccuggauGCGc--GCCACCGCCCa -3'
miRNA:   3'- -GUGgCGGugG-------CGCauaCGGUGGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 5976 0.69 0.199571
Target:  5'- uCACCGUCACUGaccg-GCgUGCCGCCCu -3'
miRNA:   3'- -GUGGCGGUGGCgcauaCG-GUGGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 11934 0.69 0.184197
Target:  5'- gCACgGUCACgCG-GUcgGCCACCGgCCu -3'
miRNA:   3'- -GUGgCGGUG-GCgCAuaCGGUGGCgGG- -5'
7145 3' -60.8 NC_001895.1 + 12858 0.7 0.160894
Target:  5'- gACgGCCAUCGUGguaAUGCCGaccuuCCGCCUu -3'
miRNA:   3'- gUGgCGGUGGCGCa--UACGGU-----GGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 8390 0.7 0.156564
Target:  5'- uCGCCGUUcguCUGCGg--GUCACUGCCCg -3'
miRNA:   3'- -GUGGCGGu--GGCGCauaCGGUGGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 8839 0.7 0.156564
Target:  5'- -cCCGCCGCCGgaGccgGUCAcCCGCCCg -3'
miRNA:   3'- guGGCGGUGGCg-CauaCGGU-GGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 1822 0.71 0.1442
Target:  5'- uGCCGCCAauCCGU-UcgGCUcCCGCCCg -3'
miRNA:   3'- gUGGCGGU--GGCGcAuaCGGuGGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 10886 0.71 0.140281
Target:  5'- uCACCGCCGgUGUGUucaAUGUUGCCGCgCa -3'
miRNA:   3'- -GUGGCGGUgGCGCA---UACGGUGGCGgG- -5'
7145 3' -60.8 NC_001895.1 + 68 0.71 0.140281
Target:  5'- cCACCGUCAgCGCGcaGUGCUuuccCCGCCUc -3'
miRNA:   3'- -GUGGCGGUgGCGCa-UACGGu---GGCGGG- -5'
7145 3' -60.8 NC_001895.1 + 5953 0.72 0.125564
Target:  5'- aCACUG-CACCgGCGU---CCACCGCCCg -3'
miRNA:   3'- -GUGGCgGUGG-CGCAuacGGUGGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.