Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7148 | 5' | -57.6 | NC_001895.1 | + | 20550 | 1.12 | 0.000175 |
Target: 5'- cAGGCGCGCCAGCUCGGCGACAAUACCg -3' miRNA: 3'- -UCCGCGCGGUCGAGCCGCUGUUAUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 5703 | 0.66 | 0.459582 |
Target: 5'- cGGUGCGCUGGCgcaccugcaaCGuGCGACAcaGCUc -3' miRNA: 3'- uCCGCGCGGUCGa---------GC-CGCUGUuaUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 750 | 0.66 | 0.43949 |
Target: 5'- cGGGCGCGaaGGCugUCGGCucguugaagGACGGcACCc -3' miRNA: 3'- -UCCGCGCggUCG--AGCCG---------CUGUUaUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 6368 | 0.67 | 0.364472 |
Target: 5'- cGGUGUggauGCCAGUgcgaaaGGCGACAAgaagGCUg -3' miRNA: 3'- uCCGCG----CGGUCGag----CCGCUGUUa---UGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 21348 | 0.68 | 0.347152 |
Target: 5'- aAGGCGCGCUgcguaAGCUCacGCaGACG--GCCa -3' miRNA: 3'- -UCCGCGCGG-----UCGAGc-CG-CUGUuaUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 4782 | 0.68 | 0.347152 |
Target: 5'- uGGgGCGUCAGCUacUGGCgGACAAguauuuCCc -3' miRNA: 3'- uCCgCGCGGUCGA--GCCG-CUGUUau----GG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 9279 | 0.7 | 0.236285 |
Target: 5'- cGGCGCGUCcccuGCUCGGCuu---UACCg -3' miRNA: 3'- uCCGCGCGGu---CGAGCCGcuguuAUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 20398 | 0.75 | 0.111368 |
Target: 5'- uGGGCGCuGCCGGUguggggauugCGGCGGCGGgaacgaugGCCg -3' miRNA: 3'- -UCCGCG-CGGUCGa---------GCCGCUGUUa-------UGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 3598 | 0.69 | 0.269543 |
Target: 5'- gAGGCuuGCCGGgucaUCGGUGACG--GCCa -3' miRNA: 3'- -UCCGcgCGGUCg---AGCCGCUGUuaUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 20593 | 0.69 | 0.289021 |
Target: 5'- uGGCGCGCCugcuugcggagugcGGCcauuUCGGCGGagucuuuUGCCa -3' miRNA: 3'- uCCGCGCGG--------------UCG----AGCCGCUguu----AUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 29799 | 0.68 | 0.314307 |
Target: 5'- -cGCGCGCCgAGaugCGGCGcguaAAUGCCg -3' miRNA: 3'- ucCGCGCGG-UCga-GCCGCug--UUAUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 10431 | 0.68 | 0.33788 |
Target: 5'- cGGCaGCGaCCGGCguuaaggucgguuUCGaCGAUAAUGCCa -3' miRNA: 3'- uCCG-CGC-GGUCG-------------AGCcGCUGUUAUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 19659 | 0.67 | 0.373353 |
Target: 5'- cAGGCaGUuCCAGCgCGGCGACuu--CCu -3' miRNA: 3'- -UCCG-CGcGGUCGaGCCGCUGuuauGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 5670 | 0.67 | 0.38238 |
Target: 5'- cAGGCaUGUCAGCcgUGGCGGCAGU-UCa -3' miRNA: 3'- -UCCGcGCGGUCGa-GCCGCUGUUAuGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 4034 | 0.67 | 0.38238 |
Target: 5'- aGGGCGUcaccGCCAccGC-CGGUGGCuuUGCUg -3' miRNA: 3'- -UCCGCG----CGGU--CGaGCCGCUGuuAUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 30596 | 0.67 | 0.390628 |
Target: 5'- gAGGauacUGCCAGCUUGacagucaGCGGCAGUAUCu -3' miRNA: 3'- -UCCgc--GCGGUCGAGC-------CGCUGUUAUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 4349 | 0.67 | 0.391551 |
Target: 5'- cGGUaGUGCUGGCgauggagcCGGUGACAccgAUACCa -3' miRNA: 3'- uCCG-CGCGGUCGa-------GCCGCUGU---UAUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 29972 | 0.67 | 0.400864 |
Target: 5'- cGGCGUGCuCAGaa-GGUGugGGaGCCg -3' miRNA: 3'- uCCGCGCG-GUCgagCCGCugUUaUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 2117 | 0.66 | 0.419908 |
Target: 5'- gGGGaCGCGCCAGCgccgcCGaacGCGugGAaAUCg -3' miRNA: 3'- -UCC-GCGCGGUCGa----GC---CGCugUUaUGG- -5' |
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7148 | 5' | -57.6 | NC_001895.1 | + | 5753 | 0.88 | 0.012215 |
Target: 5'- cAGGUGCGCCAGCgcacCGGCGGCAucACCa -3' miRNA: 3'- -UCCGCGCGGUCGa---GCCGCUGUuaUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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