miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
715 3' -51.7 AC_000019.1 + 23262 0.66 0.732127
Target:  5'- gGGCAGaGGUGGaGGCGAUUGCGAAGGg -3'
miRNA:   3'- -UCGUCgUCGUCgUCGUUGGUGUUUUC- -5'
715 3' -51.7 AC_000019.1 + 15628 0.66 0.725205
Target:  5'- cGCAGUAGgAGUauaauuacgggcgucGGCAACCACcuGAu -3'
miRNA:   3'- uCGUCGUCgUCG---------------UCGUUGGUGuuUUc -5'
715 3' -51.7 AC_000019.1 + 30584 0.66 0.697149
Target:  5'- cAGCAgGguGUAGguGCAcucgauggaAUCGCAGGAGc -3'
miRNA:   3'- -UCGU-CguCGUCguCGU---------UGGUGUUUUC- -5'
715 3' -51.7 AC_000019.1 + 18664 0.67 0.673431
Target:  5'- uGCAGCAGCcGCAgGCAAUgGugaAGAAGa -3'
miRNA:   3'- uCGUCGUCGuCGU-CGUUGgUg--UUUUC- -5'
715 3' -51.7 AC_000019.1 + 10272 0.69 0.554153
Target:  5'- uGCGGCGGUAGUAGaAGCC-CGAGGa -3'
miRNA:   3'- uCGUCGUCGUCGUCgUUGGuGUUUUc -5'
715 3' -51.7 AC_000019.1 + 8459 0.69 0.53083
Target:  5'- gGGCGGCAGCGGUuGUuccgGACC-CGGGGGc -3'
miRNA:   3'- -UCGUCGUCGUCGuCG----UUGGuGUUUUC- -5'
715 3' -51.7 AC_000019.1 + 26151 0.69 0.512433
Target:  5'- cAGCAGCGGCAGUuagAaaauacacaacaaguGCAGCaACAGGAGg -3'
miRNA:   3'- -UCGUCGUCGUCG---U---------------CGUUGgUGUUUUC- -5'
715 3' -51.7 AC_000019.1 + 3657 0.69 0.507874
Target:  5'- cGCAGCuGCAGCcGCuGCCGCc---- -3'
miRNA:   3'- uCGUCGuCGUCGuCGuUGGUGuuuuc -5'
715 3' -51.7 AC_000019.1 + 28775 0.69 0.507874
Target:  5'- cAGCGGUGGCAGUGGUGAUgGCAc--- -3'
miRNA:   3'- -UCGUCGUCGUCGUCGUUGgUGUuuuc -5'
715 3' -51.7 AC_000019.1 + 14669 0.7 0.44181
Target:  5'- uGCAGCAGCuGUAGCAGCUu------ -3'
miRNA:   3'- uCGUCGUCGuCGUCGUUGGuguuuuc -5'
715 3' -51.7 AC_000019.1 + 15821 0.71 0.420884
Target:  5'- aAGCAGCcgcugucGCAGCGGCGACUAUu---- -3'
miRNA:   3'- -UCGUCGu------CGUCGUCGUUGGUGuuuuc -5'
715 3' -51.7 AC_000019.1 + 26114 0.71 0.420884
Target:  5'- cAGauaaAGaCAGCGGCGGCGACCuccaACAGAAa -3'
miRNA:   3'- -UCg---UC-GUCGUCGUCGUUGG----UGUUUUc -5'
715 3' -51.7 AC_000019.1 + 27273 0.71 0.410648
Target:  5'- aAGCAGCgaaAGCGGCGGCAGuggucuagaugUCGCAGccGAGa -3'
miRNA:   3'- -UCGUCG---UCGUCGUCGUU-----------GGUGUU--UUC- -5'
715 3' -51.7 AC_000019.1 + 18011 0.71 0.400568
Target:  5'- aAGCGGguaCAGCAGUAGCAGCaGgGGGAGg -3'
miRNA:   3'- -UCGUC---GUCGUCGUCGUUGgUgUUUUC- -5'
715 3' -51.7 AC_000019.1 + 29573 0.72 0.371293
Target:  5'- cAGCAGUAGCcaCAGCAACCcCAGAc- -3'
miRNA:   3'- -UCGUCGUCGucGUCGUUGGuGUUUuc -5'
715 3' -51.7 AC_000019.1 + 10782 0.73 0.300612
Target:  5'- cGGCGGCAGUuGCAGUAGuuGCAGGGa -3'
miRNA:   3'- -UCGUCGUCGuCGUCGUUggUGUUUUc -5'
715 3' -51.7 AC_000019.1 + 1920 0.74 0.27692
Target:  5'- -aCAGCAGCAGCAGUucuACCugGGGu- -3'
miRNA:   3'- ucGUCGUCGUCGUCGu--UGGugUUUuc -5'
715 3' -51.7 AC_000019.1 + 25235 0.74 0.261969
Target:  5'- uGCAGCGGCAGUGGCAcuCCAgCAAGc- -3'
miRNA:   3'- uCGUCGUCGUCGUCGUu-GGU-GUUUuc -5'
715 3' -51.7 AC_000019.1 + 16946 0.75 0.247681
Target:  5'- uGCAGguGUcuuGCGGCGACgGCGGGAGg -3'
miRNA:   3'- uCGUCguCGu--CGUCGUUGgUGUUUUC- -5'
715 3' -51.7 AC_000019.1 + 13747 0.81 0.089662
Target:  5'- uGCAGCAGCAGCAGgCGACgGCGGu-- -3'
miRNA:   3'- uCGUCGUCGUCGUC-GUUGgUGUUuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.