miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7150 5' -50.3 NC_001895.1 + 19043 0.66 0.847047
Target:  5'- uCGGUUAUCuggGagcuuuacgccgcaaCCGGUGUgGAUGCCGUg -3'
miRNA:   3'- -GCCAAUAG---U---------------GGCCGUAgUUACGGUAg -5'
7150 5' -50.3 NC_001895.1 + 6358 0.66 0.824037
Target:  5'- aGcGUUAUCG-CGGUGUgGAUGCCAg- -3'
miRNA:   3'- gC-CAAUAGUgGCCGUAgUUACGGUag -5'
7150 5' -50.3 NC_001895.1 + 14514 0.66 0.824037
Target:  5'- cCGaGUUAucuguauuUCGCUGGCuAUagaAAUGCCAUCc -3'
miRNA:   3'- -GC-CAAU--------AGUGGCCG-UAg--UUACGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 22537 0.66 0.824037
Target:  5'- uGGauggCACCGGCAUgAuuuacggcauguAUGUCAUCa -3'
miRNA:   3'- gCCaauaGUGGCCGUAgU------------UACGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 6006 0.66 0.80382
Target:  5'- gCGGUggaCGCCGGUG-CAGUGUCAg- -3'
miRNA:   3'- -GCCAauaGUGGCCGUaGUUACGGUag -5'
7150 5' -50.3 NC_001895.1 + 18655 0.67 0.79339
Target:  5'- aCGGaau---UUGGCAUUGAUGCCGUCa -3'
miRNA:   3'- -GCCaauaguGGCCGUAGUUACGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 1614 0.67 0.79339
Target:  5'- uCGGUauugaUGcCACCGGCcUCGGUGUCGg- -3'
miRNA:   3'- -GCCA-----AUaGUGGCCGuAGUUACGGUag -5'
7150 5' -50.3 NC_001895.1 + 20925 0.67 0.787037
Target:  5'- gCGGUUucuucaaugcugaCACCGGCAUUuuuUGCCAc- -3'
miRNA:   3'- -GCCAAua-----------GUGGCCGUAGuu-ACGGUag -5'
7150 5' -50.3 NC_001895.1 + 18593 0.68 0.72718
Target:  5'- ----cAUCGuugaCGGCAUCAAUGCCAa- -3'
miRNA:   3'- gccaaUAGUg---GCCGUAGUUACGGUag -5'
7150 5' -50.3 NC_001895.1 + 4284 0.68 0.704071
Target:  5'- uCGG-UGUCACCGGC-UCcAUcGCCAg- -3'
miRNA:   3'- -GCCaAUAGUGGCCGuAGuUA-CGGUag -5'
7150 5' -50.3 NC_001895.1 + 11579 0.68 0.704071
Target:  5'- aGGUcAUUACCGGCggCAcagGCCAg- -3'
miRNA:   3'- gCCAaUAGUGGCCGuaGUua-CGGUag -5'
7150 5' -50.3 NC_001895.1 + 5480 0.68 0.692386
Target:  5'- cCGGcaaUAUCGCCGGUAUCcaGAcGCCAc- -3'
miRNA:   3'- -GCCa--AUAGUGGCCGUAG--UUaCGGUag -5'
7150 5' -50.3 NC_001895.1 + 18064 0.69 0.668827
Target:  5'- aGGUggcuguugCACUGGCAUCAGU-CUGUCa -3'
miRNA:   3'- gCCAaua-----GUGGCCGUAGUUAcGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 21423 0.69 0.65698
Target:  5'- ----aAUCACUGGCGUCAA--CCAUCg -3'
miRNA:   3'- gccaaUAGUGGCCGUAGUUacGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 22839 0.7 0.609453
Target:  5'- gGGaUAUUACCGGCAauaUCAGcGaCCGUCu -3'
miRNA:   3'- gCCaAUAGUGGCCGU---AGUUaC-GGUAG- -5'
7150 5' -50.3 NC_001895.1 + 32089 0.7 0.596415
Target:  5'- gGGUaguuuauuuaagaUGUCACaaauCAUCAAUGCCAUCg -3'
miRNA:   3'- gCCA-------------AUAGUGgcc-GUAGUUACGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 6921 0.71 0.55063
Target:  5'- uGGgUAUCGCCGGuUAUCAGgugauugagauUGCCAUUc -3'
miRNA:   3'- gCCaAUAGUGGCC-GUAGUU-----------ACGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 8328 0.72 0.460793
Target:  5'- gGGgacaAUCACUGGCGUCGGUGCaggCg -3'
miRNA:   3'- gCCaa--UAGUGGCCGUAGUUACGguaG- -5'
7150 5' -50.3 NC_001895.1 + 21456 0.74 0.359581
Target:  5'- gCGGUg--CACUGGCGcuuacuggcaucaUCGGUGCCAUUg -3'
miRNA:   3'- -GCCAauaGUGGCCGU-------------AGUUACGGUAG- -5'
7150 5' -50.3 NC_001895.1 + 18334 0.76 0.291931
Target:  5'- aCGG-UGUUACCGGCAUCA--GCgCAUCu -3'
miRNA:   3'- -GCCaAUAGUGGCCGUAGUuaCG-GUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.