miRNA display CGI


Results 1 - 4 of 4 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7161 5' -58.8 NC_001900.1 + 46874 1.09 0.000414
Target:  5'- uGGUGGCCGAGAGGCGGGUGAUCACGUg -3'
miRNA:   3'- -CCACCGGCUCUCCGCCCACUAGUGCA- -5'
7161 5' -58.8 NC_001900.1 + 26374 0.73 0.191276
Target:  5'- aGGUGcUCGcGGAGGaGGGUGAUCGCGUu -3'
miRNA:   3'- -CCACcGGC-UCUCCgCCCACUAGUGCA- -5'
7161 5' -58.8 NC_001900.1 + 2172 0.71 0.253991
Target:  5'- cGUGGCCGAGAauGGCcacGUGAUCACc- -3'
miRNA:   3'- cCACCGGCUCU--CCGcc-CACUAGUGca -5'
7161 5' -58.8 NC_001900.1 + 36645 0.68 0.400247
Target:  5'- --cGGUCGAGGuuGCGGGUGAUCuccuCGg -3'
miRNA:   3'- ccaCCGGCUCUc-CGCCCACUAGu---GCa -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.