Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7162 | 3' | -59.2 | NC_001900.1 | + | 27993 | 0.66 | 0.478415 |
Target: 5'- cCCCGGCgGGCAcGAAgaucacgccguucGGGccgguguaACCGGGuGCg -3' miRNA: 3'- uGGGCCG-UCGU-CUU-------------UCC--------UGGCCCuCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 34475 | 0.66 | 0.46945 |
Target: 5'- cCCCGGCgAGUcGAgggucuucucgGAGGAUC-GGAGCa -3' miRNA: 3'- uGGGCCG-UCGuCU-----------UUCCUGGcCCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 39275 | 0.66 | 0.46945 |
Target: 5'- gUCCGGUucggaAGCGGGAccaccGGGACCGcgccGAGCc -3' miRNA: 3'- uGGGCCG-----UCGUCUU-----UCCUGGCc---CUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 1174 | 0.66 | 0.449843 |
Target: 5'- --gCGGCGGUGGAgccgccggAAGcGGCCGGG-GCg -3' miRNA: 3'- uggGCCGUCGUCU--------UUC-CUGGCCCuCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 32127 | 0.66 | 0.448875 |
Target: 5'- uCCUGGUAGguGuuGGGAgCGaucucccGGAGCu -3' miRNA: 3'- uGGGCCGUCguCuuUCCUgGC-------CCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 30714 | 0.66 | 0.44021 |
Target: 5'- aACCCacCGGCcccGAAAGG-CCGGGGGUc -3' miRNA: 3'- -UGGGccGUCGu--CUUUCCuGGCCCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 2211 | 0.66 | 0.44021 |
Target: 5'- cACCaaguggGGUGGCuGGGAGGGCCuGGAGa -3' miRNA: 3'- -UGGg-----CCGUCGuCUUUCCUGGcCCUCg -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 8391 | 0.67 | 0.421303 |
Target: 5'- cCCCGGagcuGCAccgugcGGACUGGGAGUg -3' miRNA: 3'- uGGGCCgu--CGUcuuu--CCUGGCCCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 26083 | 0.67 | 0.421303 |
Target: 5'- cGCCCGGacaagGGCGGGGgucaucucGGcGACCGGG-GUg -3' miRNA: 3'- -UGGGCCg----UCGUCUU--------UC-CUGGCCCuCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 14511 | 0.67 | 0.421303 |
Target: 5'- cGCCauCGGCGGCAccgucucguaaGGAGGACacauGGGGGCg -3' miRNA: 3'- -UGG--GCCGUCGUc----------UUUCCUGg---CCCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 42415 | 0.67 | 0.402895 |
Target: 5'- -aUCGGCAgGCAGGccaggcccgaGGGGAUCGGGcuGGCc -3' miRNA: 3'- ugGGCCGU-CGUCU----------UUCCUGGCCC--UCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 7703 | 0.68 | 0.342635 |
Target: 5'- gAUCCGGCGGCucAAGGGAU--GGGGCa -3' miRNA: 3'- -UGGGCCGUCGucUUUCCUGgcCCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 20730 | 0.69 | 0.318105 |
Target: 5'- gACCgaCGGCAGCAagcuguGGcucggcucauuccACCGGGAGCa -3' miRNA: 3'- -UGG--GCCGUCGUcuuu--CC-------------UGGCCCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 22620 | 0.69 | 0.311235 |
Target: 5'- aGCCUguuucgcauGGCAGCaagacGGAGAGGAUgGGGAucGCu -3' miRNA: 3'- -UGGG---------CCGUCG-----UCUUUCCUGgCCCU--CG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 28983 | 0.69 | 0.303735 |
Target: 5'- gGCCCGGaacucgaAGUAGAA---GCCGGGAGg -3' miRNA: 3'- -UGGGCCg------UCGUCUUuccUGGCCCUCg -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 21162 | 0.7 | 0.248082 |
Target: 5'- cGCCaCGGCAGCGgcccagcGAucGGACUGugaaaGGAGCa -3' miRNA: 3'- -UGG-GCCGUCGU-------CUuuCCUGGC-----CCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 21684 | 0.7 | 0.248082 |
Target: 5'- uACCCGGUAGCAcccucugggcucuGGAGGGGCUGGcuucguGCu -3' miRNA: 3'- -UGGGCCGUCGU-------------CUUUCCUGGCCcu----CG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 23346 | 0.72 | 0.202196 |
Target: 5'- -aCCGGCGGCGGcuacGGAUCGGGcagaGGCu -3' miRNA: 3'- ugGGCCGUCGUCuuu-CCUGGCCC----UCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 2361 | 0.72 | 0.181414 |
Target: 5'- -gCCGGCucgaagcgucGGCAaGAacuaccgGAGGACUGGGAGCu -3' miRNA: 3'- ugGGCCG----------UCGU-CU-------UUCCUGGCCCUCG- -5' |
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7162 | 3' | -59.2 | NC_001900.1 | + | 16775 | 0.73 | 0.167877 |
Target: 5'- uGCUCGGCGGUaAGAAGGGACU--GAGCa -3' miRNA: 3'- -UGGGCCGUCG-UCUUUCCUGGccCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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