miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7164 5' -59 NC_001900.1 + 33654 0.66 0.495922
Target:  5'- aGGCGUCC-GGGUcGaCGuuGGCCGuGAa -3'
miRNA:   3'- aCCGCAGGaCCUA-CaGUggCCGGU-CU- -5'
7164 5' -59 NC_001900.1 + 1348 0.66 0.494903
Target:  5'- cGGCGUUcaacgcgCUGGcgGUCGCCGcCCGcGAc -3'
miRNA:   3'- aCCGCAG-------GACCuaCAGUGGCcGGU-CU- -5'
7164 5' -59 NC_001900.1 + 5492 0.66 0.485777
Target:  5'- gGGCcgGUCCUGGAucaUGaUCACgGGCaAGGa -3'
miRNA:   3'- aCCG--CAGGACCU---AC-AGUGgCCGgUCU- -5'
7164 5' -59 NC_001900.1 + 15326 0.66 0.455959
Target:  5'- cGGUGUgUUcGGUGUgaagACCGGCCAGAc -3'
miRNA:   3'- aCCGCAgGAcCUACAg---UGGCCGGUCU- -5'
7164 5' -59 NC_001900.1 + 3248 0.66 0.442385
Target:  5'- cGGCaacccguucGaCCUGGAgaugcucugccugGUCACCGGCCGcGAc -3'
miRNA:   3'- aCCG---------CaGGACCUa------------CAGUGGCCGGU-CU- -5'
7164 5' -59 NC_001900.1 + 18132 0.67 0.427156
Target:  5'- uUGGCGUCCUGGcagacUG-CGUCGGCgCAGu -3'
miRNA:   3'- -ACCGCAGGACCu----ACaGUGGCCG-GUCu -5'
7164 5' -59 NC_001900.1 + 24648 0.67 0.399459
Target:  5'- cGGCGguUCCUGGGUGa---CGGCCAc- -3'
miRNA:   3'- aCCGC--AGGACCUACagugGCCGGUcu -5'
7164 5' -59 NC_001900.1 + 44412 0.67 0.399459
Target:  5'- cUGGCGUaCCguccGGG-GUCACCcagaucuccuGGCCGGGa -3'
miRNA:   3'- -ACCGCA-GGa---CCUaCAGUGG----------CCGGUCU- -5'
7164 5' -59 NC_001900.1 + 26109 0.68 0.338673
Target:  5'- cGGCGaCCgGGGUGUCgcccaacACCGGgUAGAu -3'
miRNA:   3'- aCCGCaGGaCCUACAG-------UGGCCgGUCU- -5'
7164 5' -59 NC_001900.1 + 30159 0.69 0.323588
Target:  5'- uUGGCcUCCUGGAccaUC-UCGGCCAGGu -3'
miRNA:   3'- -ACCGcAGGACCUac-AGuGGCCGGUCU- -5'
7164 5' -59 NC_001900.1 + 37498 0.69 0.306754
Target:  5'- cGGCuuGUCagugaccaccgGGGUcggGUCGCCGGCCGGAg -3'
miRNA:   3'- aCCG--CAGga---------CCUA---CAGUGGCCGGUCU- -5'
7164 5' -59 NC_001900.1 + 5466 0.72 0.189684
Target:  5'- cGGCgGUCCUgcGGAUG-CACCGcGUCGGAu -3'
miRNA:   3'- aCCG-CAGGA--CCUACaGUGGC-CGGUCU- -5'
7164 5' -59 NC_001900.1 + 13442 0.73 0.179854
Target:  5'- gGGCGUCgU---UGUCACCGGCCuGAu -3'
miRNA:   3'- aCCGCAGgAccuACAGUGGCCGGuCU- -5'
7164 5' -59 NC_001900.1 + 45551 1.08 0.000403
Target:  5'- aUGGCGUCCUGGAUGUCACCGGCCAGAc -3'
miRNA:   3'- -ACCGCAGGACCUACAGUGGCCGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.