Results 1 - 17 of 17 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 35002 | 0.66 | 0.618729 |
Target: 5'- gCCG-AGGAuCCCGuGCUCCuuggugaaggaGCGAGGGAAc -3' miRNA: 3'- -GGCuUUCU-GGGU-CGGGG-----------UGUUCCCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 44568 | 1.08 | 0.000756 |
Target: 5'- aCCGAAAGACCCAGCCCCACAAGGGAAc -3' miRNA: 3'- -GGCUUUCUGGGUCGGGGUGUUCCCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 25542 | 0.74 | 0.197368 |
Target: 5'- cCCGGaaGAGGCCugCAGCCUCACcGGGGAu -3' miRNA: 3'- -GGCU--UUCUGG--GUCGGGGUGuUCCCUu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 41014 | 0.71 | 0.339191 |
Target: 5'- gCCGucAGGCCCcuGGCCCCACcacuGGGu- -3' miRNA: 3'- -GGCuuUCUGGG--UCGGGGUGuu--CCCuu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 48836 | 0.7 | 0.364624 |
Target: 5'- -gGAGGGGCCuuCAGCCCCuCAuuaauAGGGAAg -3' miRNA: 3'- ggCUUUCUGG--GUCGGGGuGU-----UCCCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 12096 | 0.69 | 0.400532 |
Target: 5'- aCCGGcAAGGCaucaAGCCCCACAccuGGGGc -3' miRNA: 3'- -GGCU-UUCUGgg--UCGGGGUGUu--CCCUu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 27665 | 0.68 | 0.458416 |
Target: 5'- aCGAu-GuCCUcaAGCCCCGCAAuGGGAAg -3' miRNA: 3'- gGCUuuCuGGG--UCGGGGUGUU-CCCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 5729 | 0.68 | 0.488984 |
Target: 5'- uCUGgcAGACCCacggucGGCCCgACGugAGGGAGc -3' miRNA: 3'- -GGCuuUCUGGG------UCGGGgUGU--UCCCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 14 | 0.67 | 0.552724 |
Target: 5'- -aGGAAGGC---GCCCCugGGGGGAAc -3' miRNA: 3'- ggCUUUCUGgguCGGGGugUUCCCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 11650 | 0.67 | 0.563613 |
Target: 5'- gCGAc--ACCCAGCCCgACGAGGu-- -3' miRNA: 3'- gGCUuucUGGGUCGGGgUGUUCCcuu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 4364 | 0.66 | 0.574557 |
Target: 5'- gCGGccagcGGCCUGGCUgCCGCAGGGGAc -3' miRNA: 3'- gGCUuu---CUGGGUCGG-GGUGUUCCCUu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 5199 | 0.66 | 0.607644 |
Target: 5'- gCCGAAGuggcaccagucGGCCCAGCCCuCGCGcuGGc- -3' miRNA: 3'- -GGCUUU-----------CUGGGUCGGG-GUGUucCCuu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 5466 | 0.68 | 0.499385 |
Target: 5'- gUCGAcgGAGACggUCGGCUCUACAAGGGc- -3' miRNA: 3'- -GGCU--UUCUG--GGUCGGGGUGUUCCCuu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 2568 | 0.69 | 0.438615 |
Target: 5'- gCCGcuGAGGGCgUAGCCCgACGGcGGGAAc -3' miRNA: 3'- -GGC--UUUCUGgGUCGGGgUGUU-CCCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 11203 | 0.7 | 0.391345 |
Target: 5'- uCCGcgaAGAGACCaAGCCCCACAucgaGGAGu -3' miRNA: 3'- -GGC---UUUCUGGgUCGGGGUGUuc--CCUU- -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 8328 | 0.72 | 0.270777 |
Target: 5'- uCCGGGAGGgCaucgagaAGCUCCGCGAGGGGc -3' miRNA: 3'- -GGCUUUCUgGg------UCGGGGUGUUCCCUu -5' |
|||||||
7165 | 3' | -56.3 | NC_001900.1 | + | 35482 | 0.66 | 0.618729 |
Target: 5'- uCCGAuuguAGAcaagcucuCCUguuGGCCCC-CAAGGGAu -3' miRNA: 3'- -GGCUu---UCU--------GGG---UCGGGGuGUUCCCUu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home