miRNA display CGI

Results 1 - 10 of 10 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
7166	5'	-53.8	NC_001900.1	+	9513	0.66	0.79201
	Target:  5'- aGAGCCGCGAAG-AGgacucCGGG-GUaccGGGu -3' miRNA:   3'- aCUUGGUGCUUCaUCa----GCCCgCA---CCC- -5'
7166	5'	-53.8	NC_001900.1	+	18513	0.66	0.791025
	Target:  5'- cUGAGCUgucucagGCGAuggAGUCuGGCGUGGa -3' miRNA:   3'- -ACUUGG-------UGCUucaUCAGcCCGCACCc -5'
7166	5'	-53.8	NC_001900.1	+	33827	0.67	0.719591
	Target:  5'- aGGACCACGAcGUAGUCGaucGGauccucgGUGGu -3' miRNA:   3'- aCUUGGUGCUuCAUCAGC---CCg------CACCc -5'
7166	5'	-53.8	NC_001900.1	+	5108	0.67	0.719591
	Target:  5'- gGAGuCC-CGAGGagaAGUCaacGGCGUGGGg -3' miRNA:   3'- aCUU-GGuGCUUCa--UCAGc--CCGCACCC- -5'
7166	5'	-53.8	NC_001900.1	+	20495	0.69	0.620666
	Target:  5'- -cAACCACGAcGgcgAGU-GGGCGUGGc -3' miRNA:   3'- acUUGGUGCUuCa--UCAgCCCGCACCc -5'
7166	5'	-53.8	NC_001900.1	+	40053	0.7	0.576505
	Target:  5'- cGAAUCGCGAuggcgucguaGGUAGUUGGGUGUc-- -3' miRNA:   3'- aCUUGGUGCU----------UCAUCAGCCCGCAccc -5'
7166	5'	-53.8	NC_001900.1	+	47373	0.71	0.522399
	Target:  5'- cGAACUccagcGCGGAGUAGaccggCGGGaCGUGGc -3' miRNA:   3'- aCUUGG-----UGCUUCAUCa----GCCC-GCACCc -5'
7166	5'	-53.8	NC_001900.1	+	18962	0.71	0.467328
	Target:  5'- aGGACCGCGAGGaAuccaagaacgcgcuGUCGGuCGUGGGc -3' miRNA:   3'- aCUUGGUGCUUCaU--------------CAGCCcGCACCC- -5'
7166	5'	-53.8	NC_001900.1	+	21950	0.73	0.393083
	Target:  5'- aUGAGCCGUGAGGc---UGGGCGUGGGc -3' miRNA:   3'- -ACUUGGUGCUUCaucaGCCCGCACCC- -5'
7166	5'	-53.8	NC_001900.1	+	43492	1.12	0.000915
	Target:  5'- gUGAACCACGAAGUAGUCGGGCGUGGGg -3' miRNA:   3'- -ACUUGGUGCUUCAUCAGCCCGCACCC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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