miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7167 3' -58.2 NC_001900.1 + 42331 1.06 0.000861
Target:  5'- -gACCGACGGCCACAUCGGGAAGGCCg -3'
miRNA:   3'- cgUGGCUGCCGGUGUAGCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 12305 0.82 0.052168
Target:  5'- --gUCGACGGCCACGUCuGGGAGGUCu -3'
miRNA:   3'- cguGGCUGCCGGUGUAGcCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23344 0.77 0.121044
Target:  5'- aUACCGGCGGCgGCuacggAUCGGGcaGAGGCUa -3'
miRNA:   3'- cGUGGCUGCCGgUG-----UAGCCC--UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 8603 0.74 0.176701
Target:  5'- uCGCUGACGGuuuCCGCGUCGGGGucucaacgguAGGCa -3'
miRNA:   3'- cGUGGCUGCC---GGUGUAGCCCU----------UCCGg -5'
7167 3' -58.2 NC_001900.1 + 32586 0.74 0.186304
Target:  5'- aGCACCGACucauGGcCCACGUCGaGGAuguGGUUg -3'
miRNA:   3'- -CGUGGCUG----CC-GGUGUAGC-CCUu--CCGG- -5'
7167 3' -58.2 NC_001900.1 + 28255 0.73 0.20157
Target:  5'- uGCAgUCGACGGaUCAgGUcCGGGAGGGCUc -3'
miRNA:   3'- -CGU-GGCUGCC-GGUgUA-GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23832 0.73 0.20157
Target:  5'- gGCGCUGGCuuccGGCgCugGggcUGGGAAGGCCa -3'
miRNA:   3'- -CGUGGCUG----CCG-GugUa--GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 8994 0.73 0.206895
Target:  5'- aCGCUGGCGuuccgagcuGCCAagaagcUCGGGGAGGCCg -3'
miRNA:   3'- cGUGGCUGC---------CGGUgu----AGCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 15188 0.73 0.229424
Target:  5'- cGCgGCUGACGGguaCCACGUCGaGAAGGaCCa -3'
miRNA:   3'- -CG-UGGCUGCC---GGUGUAGCcCUUCC-GG- -5'
7167 3' -58.2 NC_001900.1 + 12489 0.72 0.247653
Target:  5'- gGCACCGACaGCCcguucccgaccuACAUCGGucagaccaccAAGGCCa -3'
miRNA:   3'- -CGUGGCUGcCGG------------UGUAGCCc---------UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 30474 0.72 0.253991
Target:  5'- gGCACCaACGGCCggcucACGUCGGGcaccagcGGuGCCa -3'
miRNA:   3'- -CGUGGcUGCCGG-----UGUAGCCCu------UC-CGG- -5'
7167 3' -58.2 NC_001900.1 + 34567 0.71 0.273123
Target:  5'- cCGCCGAUGGCgGC-UCGGGucaggauguauucGGGGUCa -3'
miRNA:   3'- cGUGGCUGCCGgUGuAGCCC-------------UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 17172 0.71 0.280677
Target:  5'- -gACCGAgCGGUUcCGUCGagaGGGAGGCCg -3'
miRNA:   3'- cgUGGCU-GCCGGuGUAGC---CCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 41229 0.71 0.302121
Target:  5'- -gGCUGACGGCCGCGaCGGuGAuccacgcugcgGGGCg -3'
miRNA:   3'- cgUGGCUGCCGGUGUaGCC-CU-----------UCCGg -5'
7167 3' -58.2 NC_001900.1 + 23319 0.7 0.324804
Target:  5'- uGCGCCGgggcGCGGcCCGCGUCGGcGAGaagaucgucgucGGCa -3'
miRNA:   3'- -CGUGGC----UGCC-GGUGUAGCC-CUU------------CCGg -5'
7167 3' -58.2 NC_001900.1 + 2199 0.7 0.332642
Target:  5'- cCGCCucuCGGCCACcaaGUgggguggcUGGGAGGGCCu -3'
miRNA:   3'- cGUGGcu-GCCGGUG---UA--------GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 43040 0.7 0.340617
Target:  5'- -aGCCGGggagcguccCGG-UACAUCGGGuGAGGCCg -3'
miRNA:   3'- cgUGGCU---------GCCgGUGUAGCCC-UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 43822 0.7 0.347913
Target:  5'- -aACCGGaacGCCgcuucugGCGUCGGGAAcGGCCa -3'
miRNA:   3'- cgUGGCUgc-CGG-------UGUAGCCCUU-CCGG- -5'
7167 3' -58.2 NC_001900.1 + 27574 0.69 0.365366
Target:  5'- gGCugCGAUGGCCGCGaacgcCGaGAGGGUg -3'
miRNA:   3'- -CGugGCUGCCGGUGUa----GCcCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 20128 0.69 0.365366
Target:  5'- gGCGCUGAUGGCCgACGaCGuaAAGGUCa -3'
miRNA:   3'- -CGUGGCUGCCGG-UGUaGCccUUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.