miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7167 3' -58.2 NC_001900.1 + 469 0.67 0.496035
Target:  5'- uGCACgCGGCuaccGGCCGCuagUGGGuugcgucuGGCCu -3'
miRNA:   3'- -CGUG-GCUG----CCGGUGua-GCCCuu------CCGG- -5'
7167 3' -58.2 NC_001900.1 + 2199 0.7 0.332642
Target:  5'- cCGCCucuCGGCCACcaaGUgggguggcUGGGAGGGCCu -3'
miRNA:   3'- cGUGGcu-GCCGGUG---UA--------GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 3068 0.66 0.53719
Target:  5'- cCGCCGAC--CCGaccggCGGGAAGGUCg -3'
miRNA:   3'- cGUGGCUGccGGUgua--GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 3347 0.68 0.43718
Target:  5'- cCACCGcaGCGGCCACGUUcuGcuGGCCc -3'
miRNA:   3'- cGUGGC--UGCCGGUGUAGccCuuCCGG- -5'
7167 3' -58.2 NC_001900.1 + 3459 0.66 0.55188
Target:  5'- gGCACCGAcacccCGGCCAUcgacuacaacgacguGUCcgagaacccgcaGGGucuGGCCg -3'
miRNA:   3'- -CGUGGCU-----GCCGGUG---------------UAG------------CCCuu-CCGG- -5'
7167 3' -58.2 NC_001900.1 + 4954 0.67 0.506198
Target:  5'- uCACCGAgGaguuCCACAgggUCGaGGAAGGCa -3'
miRNA:   3'- cGUGGCUgCc---GGUGU---AGC-CCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 5586 0.69 0.380801
Target:  5'- cGCACCGAgcuggcCGGCCGauccaugacgCGGGGGuGGUCa -3'
miRNA:   3'- -CGUGGCU------GCCGGUgua-------GCCCUU-CCGG- -5'
7167 3' -58.2 NC_001900.1 + 6330 0.67 0.496035
Target:  5'- cGCACCGgccACGGCCGCuGUC---AAGGUCa -3'
miRNA:   3'- -CGUGGC---UGCCGGUG-UAGcccUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 6332 0.67 0.475995
Target:  5'- cGCGa-GAUGGUCaacgACAUCGaGGAGGGUCu -3'
miRNA:   3'- -CGUggCUGCCGG----UGUAGC-CCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 7140 0.69 0.400247
Target:  5'- uCGCCauCGGCCGgAUCGugauGAAGGCCa -3'
miRNA:   3'- cGUGGcuGCCGGUgUAGCc---CUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 7961 0.69 0.391329
Target:  5'- cGCgGCCGGUGGCCGCAUCG---AGGCg -3'
miRNA:   3'- -CG-UGGCUGCCGGUGUAGCccuUCCGg -5'
7167 3' -58.2 NC_001900.1 + 8174 0.68 0.456365
Target:  5'- gGCACCGAgaCGGUCGC--CGaGAAGGCg -3'
miRNA:   3'- -CGUGGCU--GCCGGUGuaGCcCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 8603 0.74 0.176701
Target:  5'- uCGCUGACGGuuuCCGCGUCGGGGucucaacgguAGGCa -3'
miRNA:   3'- cGUGGCUGCC---GGUGUAGCCCU----------UCCGg -5'
7167 3' -58.2 NC_001900.1 + 8777 0.66 0.565628
Target:  5'- cGCGCCGACgugaaggaguucgaGGCaUACGUCGacuccuGGGGCCg -3'
miRNA:   3'- -CGUGGCUG--------------CCG-GUGUAGCcc----UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 8994 0.73 0.206895
Target:  5'- aCGCUGGCGuuccgagcuGCCAagaagcUCGGGGAGGCCg -3'
miRNA:   3'- cGUGGCUGC---------CGGUgu----AGCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 9931 0.66 0.557156
Target:  5'- -aGCCccCGGCCGuccagguCAUCGGGGAGcGCa -3'
miRNA:   3'- cgUGGcuGCCGGU-------GUAGCCCUUC-CGg -5'
7167 3' -58.2 NC_001900.1 + 10540 0.67 0.466127
Target:  5'- cGCACUGACccGCUACucgCGGGAcauGGCg -3'
miRNA:   3'- -CGUGGCUGc-CGGUGua-GCCCUu--CCGg -5'
7167 3' -58.2 NC_001900.1 + 11806 0.66 0.557156
Target:  5'- uGUA-CGACGGCCcUGUCGGcguccacGAAGGCa -3'
miRNA:   3'- -CGUgGCUGCCGGuGUAGCC-------CUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 12305 0.82 0.052168
Target:  5'- --gUCGACGGCCACGUCuGGGAGGUCu -3'
miRNA:   3'- cguGGCUGCCGGUGUAGcCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 12489 0.72 0.247653
Target:  5'- gGCACCGACaGCCcguucccgaccuACAUCGGucagaccaccAAGGCCa -3'
miRNA:   3'- -CGUGGCUGcCGG------------UGUAGCCc---------UUCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.