miRNA display CGI


Results 1 - 20 of 62 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7167 3' -58.2 NC_001900.1 + 23344 0.77 0.121044
Target:  5'- aUACCGGCGGCgGCuacggAUCGGGcaGAGGCUa -3'
miRNA:   3'- cGUGGCUGCCGgUG-----UAGCCC--UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 39450 0.67 0.466127
Target:  5'- cGCACCGugGGCC-----GGGAuacuuGGCg -3'
miRNA:   3'- -CGUGGCugCCGGuguagCCCUu----CCGg -5'
7167 3' -58.2 NC_001900.1 + 19582 0.67 0.506198
Target:  5'- cGCugCGGaucaagguCGGCCGCGagcaGGGcGGGCUc -3'
miRNA:   3'- -CGugGCU--------GCCGGUGUag--CCCuUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 41725 0.66 0.568813
Target:  5'- gGUucuCUGA-GGCCACGUCGGcgucGGAGGUa -3'
miRNA:   3'- -CGu--GGCUgCCGGUGUAGCC----CUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 12489 0.72 0.247653
Target:  5'- gGCACCGACaGCCcguucccgaccuACAUCGGucagaccaccAAGGCCa -3'
miRNA:   3'- -CGUGGCUGcCGG------------UGUAGCCc---------UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 30474 0.72 0.253991
Target:  5'- gGCACCaACGGCCggcucACGUCGGGcaccagcGGuGCCa -3'
miRNA:   3'- -CGUGGcUGCCGG-----UGUAGCCCu------UC-CGG- -5'
7167 3' -58.2 NC_001900.1 + 43040 0.7 0.340617
Target:  5'- -aGCCGGggagcguccCGG-UACAUCGGGuGAGGCCg -3'
miRNA:   3'- cgUGGCU---------GCCgGUGUAGCCC-UUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 43822 0.7 0.347913
Target:  5'- -aACCGGaacGCCgcuucugGCGUCGGGAAcGGCCa -3'
miRNA:   3'- cgUGGCUgc-CGG-------UGUAGCCCUU-CCGG- -5'
7167 3' -58.2 NC_001900.1 + 46840 0.68 0.418466
Target:  5'- gGCAgCGcACGGCC--GUCGGGAAcuGuGCCu -3'
miRNA:   3'- -CGUgGC-UGCCGGugUAGCCCUU--C-CGG- -5'
7167 3' -58.2 NC_001900.1 + 13025 0.67 0.466127
Target:  5'- gGCGgCGAgGGCUgagccuaacuugACAUccacCGGGAggGGGCCg -3'
miRNA:   3'- -CGUgGCUgCCGG------------UGUA----GCCCU--UCCGG- -5'
7167 3' -58.2 NC_001900.1 + 8174 0.68 0.456365
Target:  5'- gGCACCGAgaCGGUCGC--CGaGAAGGCg -3'
miRNA:   3'- -CGUGGCU--GCCGGUGuaGCcCUUCCGg -5'
7167 3' -58.2 NC_001900.1 + 7140 0.69 0.400247
Target:  5'- uCGCCauCGGCCGgAUCGugauGAAGGCCa -3'
miRNA:   3'- cGUGGcuGCCGGUgUAGCc---CUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 32586 0.74 0.186304
Target:  5'- aGCACCGACucauGGcCCACGUCGaGGAuguGGUUg -3'
miRNA:   3'- -CGUGGCUG----CC-GGUGUAGC-CCUu--CCGG- -5'
7167 3' -58.2 NC_001900.1 + 25115 0.68 0.456365
Target:  5'- aCAcCCGAUGGUC-CGUgGGuGGAGGUCa -3'
miRNA:   3'- cGU-GGCUGCCGGuGUAgCC-CUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 23832 0.73 0.20157
Target:  5'- gGCGCUGGCuuccGGCgCugGggcUGGGAAGGCCa -3'
miRNA:   3'- -CGUGGCUG----CCG-GugUa--GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 7961 0.69 0.391329
Target:  5'- cGCgGCCGGUGGCCGCAUCG---AGGCg -3'
miRNA:   3'- -CG-UGGCUGCCGGUGUAGCccuUCCGg -5'
7167 3' -58.2 NC_001900.1 + 28955 0.68 0.456365
Target:  5'- aGCGCCGAC--CCAgGUaCGGGAugauguuGGCCc -3'
miRNA:   3'- -CGUGGCUGccGGUgUA-GCCCUu------CCGG- -5'
7167 3' -58.2 NC_001900.1 + 6330 0.67 0.496035
Target:  5'- cGCACCGgccACGGCCGCuGUC---AAGGUCa -3'
miRNA:   3'- -CGUGGC---UGCCGGUG-UAGcccUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 28255 0.73 0.20157
Target:  5'- uGCAgUCGACGGaUCAgGUcCGGGAGGGCUc -3'
miRNA:   3'- -CGU-GGCUGCC-GGUgUA-GCCCUUCCGG- -5'
7167 3' -58.2 NC_001900.1 + 2199 0.7 0.332642
Target:  5'- cCGCCucuCGGCCACcaaGUgggguggcUGGGAGGGCCu -3'
miRNA:   3'- cGUGGcu-GCCGGUG---UA--------GCCCUUCCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.