miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7168 5' -58.3 NC_001900.1 + 41700 1.06 0.00063
Target:  5'- uGUCGAGGCUCACCCCGCCUCCUUUCUc -3'
miRNA:   3'- -CAGCUCCGAGUGGGGCGGAGGAAAGA- -5'
7168 5' -58.3 NC_001900.1 + 34526 0.7 0.284915
Target:  5'- cUCGGGGCaUCGCCCCcauguguCCUCCUUa-- -3'
miRNA:   3'- cAGCUCCG-AGUGGGGc------GGAGGAAaga -5'
7168 5' -58.3 NC_001900.1 + 7398 0.68 0.389627
Target:  5'- -cCGGaGCUUGCCCCGUCUCCgccUCa -3'
miRNA:   3'- caGCUcCGAGUGGGGCGGAGGaa-AGa -5'
7168 5' -58.3 NC_001900.1 + 47897 0.67 0.46545
Target:  5'- -cCGGcGGCcCACCgCCGCCUCCa---- -3'
miRNA:   3'- caGCU-CCGaGUGG-GGCGGAGGaaaga -5'
7168 5' -58.3 NC_001900.1 + 34023 0.66 0.516533
Target:  5'- uGUCGGGGC-CACCgUGCgCUUCUUg-- -3'
miRNA:   3'- -CAGCUCCGaGUGGgGCG-GAGGAAaga -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.