miRNA display CGI


Results 1 - 3 of 3 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7169 3' -52.8 NC_001900.1 + 43635 0.67 0.763984
Target:  5'- -uGCC--GAGGuCGGUUCGGGU-GUCGu -3'
miRNA:   3'- uuUGGaaCUCC-GCCAAGCCUAgCAGU- -5'
7169 3' -52.8 NC_001900.1 + 17405 0.68 0.653493
Target:  5'- -cACCgcGAGGCGGaccUUCGGugaagcguUCGUCAa -3'
miRNA:   3'- uuUGGaaCUCCGCC---AAGCCu-------AGCAGU- -5'
7169 3' -52.8 NC_001900.1 + 41516 1.06 0.002184
Target:  5'- aAAACCUUGAGGCGGUUCGGAUCGUCAu -3'
miRNA:   3'- -UUUGGAACUCCGCCAAGCCUAGCAGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.