miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7169 5' -49.1 NC_001900.1 + 46777 0.66 0.946707
Target:  5'- -cUGGCGUGUUCCGccuCAGCCAa---- -3'
miRNA:   3'- uaACUGCAUGAGGCu--GUCGGUaaagu -5'
7169 5' -49.1 NC_001900.1 + 43670 0.66 0.930372
Target:  5'- -cUGGCGUACUCCG-CAGUgGc---- -3'
miRNA:   3'- uaACUGCAUGAGGCuGUCGgUaaagu -5'
7169 5' -49.1 NC_001900.1 + 41556 1.07 0.004253
Target:  5'- uAUUGACGUACUCCGACAGCCAUUUCAa -3'
miRNA:   3'- -UAACUGCAUGAGGCUGUCGGUAAAGU- -5'
7169 5' -49.1 NC_001900.1 + 41532 0.72 0.640908
Target:  5'- -gUGACGUugUCCGACAGgCCc----- -3'
miRNA:   3'- uaACUGCAugAGGCUGUC-GGuaaagu -5'
7169 5' -49.1 NC_001900.1 + 39265 0.71 0.744474
Target:  5'- cUUGugGUcaugguCUaCCGAUAGCCGUUUCc -3'
miRNA:   3'- uAACugCAu-----GA-GGCUGUCGGUAAAGu -5'
7169 5' -49.1 NC_001900.1 + 36339 0.66 0.946707
Target:  5'- cUUGACGUugUCCGACgAGUa------ -3'
miRNA:   3'- uAACUGCAugAGGCUG-UCGguaaagu -5'
7169 5' -49.1 NC_001900.1 + 36140 0.76 0.428196
Target:  5'- uGUUGACGUGCUCgGugAGCgAcUUCAc -3'
miRNA:   3'- -UAACUGCAUGAGgCugUCGgUaAAGU- -5'
7169 5' -49.1 NC_001900.1 + 33234 0.71 0.744474
Target:  5'- -cUGGCGUACUUCGGCaccAGCCAc---- -3'
miRNA:   3'- uaACUGCAUGAGGCUG---UCGGUaaagu -5'
7169 5' -49.1 NC_001900.1 + 23810 0.66 0.941573
Target:  5'- --cGACGgGCUCCGGuCGGCUA--UCGg -3'
miRNA:   3'- uaaCUGCaUGAGGCU-GUCGGUaaAGU- -5'
7169 5' -49.1 NC_001900.1 + 23057 0.66 0.930372
Target:  5'- ---aACGUACUCCGgGCGGUCAUg--- -3'
miRNA:   3'- uaacUGCAUGAGGC-UGUCGGUAaagu -5'
7169 5' -49.1 NC_001900.1 + 21566 0.67 0.92305
Target:  5'- --aGACgGUGCgccgcuacaucgCCGACGGCCGgcUCAa -3'
miRNA:   3'- uaaCUG-CAUGa-----------GGCUGUCGGUaaAGU- -5'
7169 5' -49.1 NC_001900.1 + 12481 0.67 0.924302
Target:  5'- --cGAUGcACggcaCCGACAGCCcgUUCc -3'
miRNA:   3'- uaaCUGCaUGa---GGCUGUCGGuaAAGu -5'
7169 5' -49.1 NC_001900.1 + 8644 0.68 0.889285
Target:  5'- -cUGcCGgguCUCCGACGGCCugcugUUCGu -3'
miRNA:   3'- uaACuGCau-GAGGCUGUCGGua---AAGU- -5'
7169 5' -49.1 NC_001900.1 + 2245 0.68 0.855917
Target:  5'- cUUGA-GUACUCgggUGACGGCCAggUCGa -3'
miRNA:   3'- uAACUgCAUGAG---GCUGUCGGUaaAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.