Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 41099 | 1.09 | 0.000168 |
Target: 5'- gUUGCUGCCUCGAUGCGGCCACCGGCCg -3' miRNA: 3'- -AACGACGGAGCUACGCCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 6730 | 0.76 | 0.066467 |
Target: 5'- cUGCgGCCUuccCGAUGUGGCCGUCGGUCg -3' miRNA: 3'- aACGaCGGA---GCUACGCCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 23940 | 0.76 | 0.067798 |
Target: 5'- -aGCgGUCUCGGUGCGGCUcgguccaccucgaaACCGGCg -3' miRNA: 3'- aaCGaCGGAGCUACGCCGG--------------UGGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 47441 | 0.75 | 0.080989 |
Target: 5'- -cGCUGaCCgggGGUGUcGCCACCGGCCg -3' miRNA: 3'- aaCGAC-GGag-CUACGcCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 460 | 0.75 | 0.083297 |
Target: 5'- -aGCaGCCUaugcacGCGGCUACCGGCCg -3' miRNA: 3'- aaCGaCGGAgcua--CGCCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 40967 | 0.73 | 0.110078 |
Target: 5'- aUGUUGCCUuCGAUGaccuCGGCCAUCgcguGGCCu -3' miRNA: 3'- aACGACGGA-GCUAC----GCCGGUGG----CCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 148 | 0.72 | 0.126323 |
Target: 5'- gUGCUGaCCUgcgaCGAUGCGaaUGCCGGCCu -3' miRNA: 3'- aACGAC-GGA----GCUACGCcgGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 29635 | 0.71 | 0.144765 |
Target: 5'- -cGCUucGCCUCGuugGCGaGCUugCGGCUg -3' miRNA: 3'- aaCGA--CGGAGCua-CGC-CGGugGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 8739 | 0.71 | 0.156981 |
Target: 5'- ----cGCaCUCGAcGCGGCCAaccaCGGCCg -3' miRNA: 3'- aacgaCG-GAGCUaCGCCGGUg---GCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 26964 | 0.7 | 0.174715 |
Target: 5'- -cGCUGCgUUGuucAUGuCGuGCCGCUGGCCu -3' miRNA: 3'- aaCGACGgAGC---UAC-GC-CGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 33778 | 0.7 | 0.179419 |
Target: 5'- -gGC-GUCUCGGccgaaccgUGCGGCCA-CGGCCu -3' miRNA: 3'- aaCGaCGGAGCU--------ACGCCGGUgGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 27898 | 0.7 | 0.184236 |
Target: 5'- gUUGaUGCC-CGGaGCGGacuguCCACCGGCCa -3' miRNA: 3'- -AACgACGGaGCUaCGCC-----GGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 2428 | 0.7 | 0.186194 |
Target: 5'- cUGCUGCCg-GGUGgcugugugaggucgaCGGCC-CCGGCUg -3' miRNA: 3'- aACGACGGagCUAC---------------GCCGGuGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 33934 | 0.7 | 0.189166 |
Target: 5'- -aGCgUGCCUCGGcuggUGUGGCCgacgcucgaccaGCCGGUg -3' miRNA: 3'- aaCG-ACGGAGCU----ACGCCGG------------UGGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 5295 | 0.69 | 0.194212 |
Target: 5'- cUGCUGCCggcCGugcGUGaCGGCCucauCCaGGCCg -3' miRNA: 3'- aACGACGGa--GC---UAC-GCCGGu---GG-CCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 45541 | 0.69 | 0.204658 |
Target: 5'- -cGCcGCgUCGAUgGCGuccuggauGUCACCGGCCa -3' miRNA: 3'- aaCGaCGgAGCUA-CGC--------CGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 37766 | 0.68 | 0.238337 |
Target: 5'- -aGCUGCagagCGcguuccuGUGCGGCCuuuCCgGGCCa -3' miRNA: 3'- aaCGACGga--GC-------UACGCCGGu--GG-CCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 39921 | 0.68 | 0.238946 |
Target: 5'- -gGCUGUCaUCGGa-CGGCCAccacCCGGCCc -3' miRNA: 3'- aaCGACGG-AGCUacGCCGGU----GGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 42741 | 0.68 | 0.2514 |
Target: 5'- -aGCgGCCguggcCGGUGCGGCUgcGCCGaCCa -3' miRNA: 3'- aaCGaCGGa----GCUACGCCGG--UGGCcGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 8934 | 0.68 | 0.2514 |
Target: 5'- --cCUGCUg-GAcGCGGCUGCUGGCCa -3' miRNA: 3'- aacGACGGagCUaCGCCGGUGGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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