Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7170 | 3' | -61.6 | NC_001900.1 | + | 148 | 0.72 | 0.126323 |
Target: 5'- gUGCUGaCCUgcgaCGAUGCGaaUGCCGGCCu -3' miRNA: 3'- aACGAC-GGA----GCUACGCcgGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 460 | 0.75 | 0.083297 |
Target: 5'- -aGCaGCCUaugcacGCGGCUACCGGCCg -3' miRNA: 3'- aaCGaCGGAgcua--CGCCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 2428 | 0.7 | 0.186194 |
Target: 5'- cUGCUGCCg-GGUGgcugugugaggucgaCGGCC-CCGGCUg -3' miRNA: 3'- aACGACGGagCUAC---------------GCCGGuGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 2617 | 0.67 | 0.291974 |
Target: 5'- -gGaCUGCUcaCGGUGCGGCCAUgaGGCg -3' miRNA: 3'- aaC-GACGGa-GCUACGCCGGUGg-CCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 3013 | 0.66 | 0.321766 |
Target: 5'- cUGCUGCUgacCGAa--GGCgACCGGCg -3' miRNA: 3'- aACGACGGa--GCUacgCCGgUGGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 3366 | 0.67 | 0.289117 |
Target: 5'- cUGCUgGCCcacgcgaaaggugUGGUGaGGCCgGCCGGCCg -3' miRNA: 3'- aACGA-CGGa------------GCUACgCCGG-UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 4135 | 0.66 | 0.321766 |
Target: 5'- --uCUGCCgaccggCGAaGCGGCCGgCGGUg -3' miRNA: 3'- aacGACGGa-----GCUaCGCCGGUgGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 4336 | 0.66 | 0.343939 |
Target: 5'- -aGCUcGCUcggaUCGAcaagguguggcaGCGGCCAgCGGCCu -3' miRNA: 3'- aaCGA-CGG----AGCUa-----------CGCCGGUgGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 5295 | 0.69 | 0.194212 |
Target: 5'- cUGCUGCCggcCGugcGUGaCGGCCucauCCaGGCCg -3' miRNA: 3'- aACGACGGa--GC---UAC-GCCGGu---GG-CCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 6730 | 0.76 | 0.066467 |
Target: 5'- cUGCgGCCUuccCGAUGUGGCCGUCGGUCg -3' miRNA: 3'- aACGaCGGA---GCUACGCCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 8739 | 0.71 | 0.156981 |
Target: 5'- ----cGCaCUCGAcGCGGCCAaccaCGGCCg -3' miRNA: 3'- aacgaCG-GAGCUaCGCCGGUg---GCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 8934 | 0.68 | 0.2514 |
Target: 5'- --cCUGCUg-GAcGCGGCUGCUGGCCa -3' miRNA: 3'- aacGACGGagCUaCGCCGGUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 15261 | 0.66 | 0.32956 |
Target: 5'- cUGCUGCaccaguUCGAUgaGCaGUCGCuCGGCCu -3' miRNA: 3'- aACGACGg-----AGCUA--CGcCGGUG-GCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 15756 | 0.67 | 0.299215 |
Target: 5'- ----aGaCCguggaGGUGCGGCCugcGCCGGCCg -3' miRNA: 3'- aacgaC-GGag---CUACGCCGG---UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 17445 | 0.67 | 0.277906 |
Target: 5'- -aGCUugGCUcCGGU-CGGCCcgaACCGGCCg -3' miRNA: 3'- aaCGA--CGGaGCUAcGCCGG---UGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 18242 | 0.66 | 0.31411 |
Target: 5'- -aGCUGgUUCGAUGacgcaGGCUcCUGGCUg -3' miRNA: 3'- aaCGACgGAGCUACg----CCGGuGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 21621 | 0.66 | 0.345564 |
Target: 5'- -cGCgucgGCacaUCGGUGCucGGCUACCcGGUCg -3' miRNA: 3'- aaCGa---CGg--AGCUACG--CCGGUGG-CCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 23940 | 0.76 | 0.067798 |
Target: 5'- -aGCgGUCUCGGUGCGGCUcgguccaccucgaaACCGGCg -3' miRNA: 3'- aaCGaCGGAGCUACGCCGG--------------UGGCCGg -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 25655 | 0.67 | 0.284872 |
Target: 5'- gUGCUcgcggaucaucGCCgCGAcgugagGCGGCacgguCACCGGCCg -3' miRNA: 3'- aACGA-----------CGGaGCUa-----CGCCG-----GUGGCCGG- -5' |
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7170 | 3' | -61.6 | NC_001900.1 | + | 26447 | 0.66 | 0.31411 |
Target: 5'- cUUGCUGCCaugCGAaacaGGCUACCGGa- -3' miRNA: 3'- -AACGACGGa--GCUacg-CCGGUGGCCgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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