miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7170 5' -50.8 NC_001900.1 + 41138 1.11 0.00212
Target:  5'- aUGAACCGGUUGACAUCGAGUCCGUACu -3'
miRNA:   3'- -ACUUGGCCAACUGUAGCUCAGGCAUG- -5'
7170 5' -50.8 NC_001900.1 + 3895 0.8 0.23416
Target:  5'- gGAACCGGaccuacGACAUCGAGUUCGUcgGCg -3'
miRNA:   3'- aCUUGGCCaa----CUGUAGCUCAGGCA--UG- -5'
7170 5' -50.8 NC_001900.1 + 40313 0.7 0.741555
Target:  5'- gUGAGCCgcugcggccguGGUUGGCcgcGUCGAGUgcgaugacucggaacCCGUGCu -3'
miRNA:   3'- -ACUUGG-----------CCAACUG---UAGCUCA---------------GGCAUG- -5'
7170 5' -50.8 NC_001900.1 + 44174 0.69 0.765085
Target:  5'- cGAGCCGGaagcucucaGUCGAG-CCGUACc -3'
miRNA:   3'- aCUUGGCCaacug----UAGCUCaGGCAUG- -5'
7170 5' -50.8 NC_001900.1 + 4525 0.68 0.838273
Target:  5'- cGAACUucgaguGGUgGACGUgGucaGGUCCGUACa -3'
miRNA:   3'- aCUUGG------CCAaCUGUAgC---UCAGGCAUG- -5'
7170 5' -50.8 NC_001900.1 + 42077 0.66 0.895978
Target:  5'- cGGGCCGGUgacGugGUgGAGcCCGa-- -3'
miRNA:   3'- aCUUGGCCAa--CugUAgCUCaGGCaug -5'
7170 5' -50.8 NC_001900.1 + 7449 0.66 0.903129
Target:  5'- aGggUCGGUgcucCAUCGAGcCCG-ACa -3'
miRNA:   3'- aCuuGGCCAacu-GUAGCUCaGGCaUG- -5'
7170 5' -50.8 NC_001900.1 + 4445 0.66 0.916559
Target:  5'- cUGGACCaGGUaauUGAgGuUCGAGUCCuugGCg -3'
miRNA:   3'- -ACUUGG-CCA---ACUgU-AGCUCAGGca-UG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.