Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7170 | 5' | -50.8 | NC_001900.1 | + | 3895 | 0.8 | 0.23416 |
Target: 5'- gGAACCGGaccuacGACAUCGAGUUCGUcgGCg -3' miRNA: 3'- aCUUGGCCaa----CUGUAGCUCAGGCA--UG- -5' |
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7170 | 5' | -50.8 | NC_001900.1 | + | 4445 | 0.66 | 0.916559 |
Target: 5'- cUGGACCaGGUaauUGAgGuUCGAGUCCuugGCg -3' miRNA: 3'- -ACUUGG-CCA---ACUgU-AGCUCAGGca-UG- -5' |
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7170 | 5' | -50.8 | NC_001900.1 | + | 4525 | 0.68 | 0.838273 |
Target: 5'- cGAACUucgaguGGUgGACGUgGucaGGUCCGUACa -3' miRNA: 3'- aCUUGG------CCAaCUGUAgC---UCAGGCAUG- -5' |
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7170 | 5' | -50.8 | NC_001900.1 | + | 7449 | 0.66 | 0.903129 |
Target: 5'- aGggUCGGUgcucCAUCGAGcCCG-ACa -3' miRNA: 3'- aCuuGGCCAacu-GUAGCUCaGGCaUG- -5' |
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7170 | 5' | -50.8 | NC_001900.1 | + | 40313 | 0.7 | 0.741555 |
Target: 5'- gUGAGCCgcugcggccguGGUUGGCcgcGUCGAGUgcgaugacucggaacCCGUGCu -3' miRNA: 3'- -ACUUGG-----------CCAACUG---UAGCUCA---------------GGCAUG- -5' |
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7170 | 5' | -50.8 | NC_001900.1 | + | 41138 | 1.11 | 0.00212 |
Target: 5'- aUGAACCGGUUGACAUCGAGUCCGUACu -3' miRNA: 3'- -ACUUGGCCAACUGUAGCUCAGGCAUG- -5' |
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7170 | 5' | -50.8 | NC_001900.1 | + | 42077 | 0.66 | 0.895978 |
Target: 5'- cGGGCCGGUgacGugGUgGAGcCCGa-- -3' miRNA: 3'- aCUUGGCCAa--CugUAgCUCaGGCaug -5' |
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7170 | 5' | -50.8 | NC_001900.1 | + | 44174 | 0.69 | 0.765085 |
Target: 5'- cGAGCCGGaagcucucaGUCGAG-CCGUACc -3' miRNA: 3'- aCUUGGCCaacug----UAGCUCaGGCAUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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