miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7172 5' -57 NC_001900.1 + 27193 0.66 0.6048
Target:  5'- -aCGACGUGCuGUCGcGGGUcGUUCGGa -3'
miRNA:   3'- caGCUGCAUGuCGGCcCCCA-UAGGCU- -5'
7172 5' -57 NC_001900.1 + 8215 0.66 0.6048
Target:  5'- --gGACGUGCAGuCCGGGaa-GUCCGu -3'
miRNA:   3'- cagCUGCAUGUC-GGCCCccaUAGGCu -5'
7172 5' -57 NC_001900.1 + 35961 0.66 0.583136
Target:  5'- cUCGuCGcGCAGCCcGGGGUGcUCGAc -3'
miRNA:   3'- cAGCuGCaUGUCGGcCCCCAUaGGCU- -5'
7172 5' -57 NC_001900.1 + 3131 0.67 0.561632
Target:  5'- --aGGCGaGCGGCgGGGGGUgaugGUCCc- -3'
miRNA:   3'- cagCUGCaUGUCGgCCCCCA----UAGGcu -5'
7172 5' -57 NC_001900.1 + 3187 0.67 0.529809
Target:  5'- -cCGAC-UGCucccccGCCGGGGGUugacccUCCGAa -3'
miRNA:   3'- caGCUGcAUGu-----CGGCCCCCAu-----AGGCU- -5'
7172 5' -57 NC_001900.1 + 27315 0.68 0.467381
Target:  5'- --gGAUGUGCagAGCUGGGuucuucgguucgcGGUAUCCGAu -3'
miRNA:   3'- cagCUGCAUG--UCGGCCC-------------CCAUAGGCU- -5'
7172 5' -57 NC_001900.1 + 38547 0.68 0.458487
Target:  5'- -gCGACcguguuGUACAGCCGGGGcuUAUCCc- -3'
miRNA:   3'- caGCUG------CAUGUCGGCCCCc-AUAGGcu -5'
7172 5' -57 NC_001900.1 + 28258 0.69 0.410806
Target:  5'- aGUCGACGgauCAGguCCGGGaGGgcUCCGu -3'
miRNA:   3'- -CAGCUGCau-GUC--GGCCC-CCauAGGCu -5'
7172 5' -57 NC_001900.1 + 39472 0.7 0.401645
Target:  5'- cUCGGCGUACAugcgcGUCGGGGGcuccacCCGGa -3'
miRNA:   3'- cAGCUGCAUGU-----CGGCCCCCaua---GGCU- -5'
7172 5' -57 NC_001900.1 + 23179 0.71 0.32528
Target:  5'- --gGACGUAgUGGCCGGGgaGGUGUUCGAg -3'
miRNA:   3'- cagCUGCAU-GUCGGCCC--CCAUAGGCU- -5'
7172 5' -57 NC_001900.1 + 47590 0.76 0.166599
Target:  5'- -gCGACGUuucguCGGCCGGGGGUGg-CGAa -3'
miRNA:   3'- caGCUGCAu----GUCGGCCCCCAUagGCU- -5'
7172 5' -57 NC_001900.1 + 39717 1.08 0.00074
Target:  5'- aGUCGACGUACAGCCGGGGGUAUCCGAc -3'
miRNA:   3'- -CAGCUGCAUGUCGGCCCCCAUAGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.