miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7173 5' -59.6 NC_001900.1 + 21081 0.66 0.521886
Target:  5'- gUCGuGUUC-GAAGaGGGGCCacugACCGGGa -3'
miRNA:   3'- aGGC-CAAGcCUUCgCCCUGG----UGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 10637 0.66 0.511765
Target:  5'- cCCaGgcCGuGAucacuGCGGGGCuCGCCGGGu -3'
miRNA:   3'- aGGcCaaGC-CUu----CGCCCUG-GUGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 30000 0.66 0.511765
Target:  5'- gUCCaG-UCGGAcGCGGGcaGCgucugCGCCGGGa -3'
miRNA:   3'- -AGGcCaAGCCUuCGCCC--UG-----GUGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 13975 0.66 0.511765
Target:  5'- gUCCGGUacgUCGGcacgacgugcuGAGCaGGACaACgGGGg -3'
miRNA:   3'- -AGGCCA---AGCC-----------UUCGcCCUGgUGgCCC- -5'
7173 5' -59.6 NC_001900.1 + 1158 0.66 0.491776
Target:  5'- gUgGGUggacUUGGAGGCGGcGguggaGCCGCCGGa -3'
miRNA:   3'- aGgCCA----AGCCUUCGCC-C-----UGGUGGCCc -5'
7173 5' -59.6 NC_001900.1 + 10763 0.68 0.372163
Target:  5'- gUCGGUaugCGGAAGCugccGACCuggGCCGGGa -3'
miRNA:   3'- aGGCCAa--GCCUUCGcc--CUGG---UGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 39275 1.11 0.000328
Target:  5'- gUCCGGUUCGGAAGCGGGACCACCGGGa -3'
miRNA:   3'- -AGGCCAAGCCUUCGCCCUGGUGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 37480 0.74 0.16042
Target:  5'- cUUCGGagUCGGuuccAGCGGcuugucaguGACCACCGGGg -3'
miRNA:   3'- -AGGCCa-AGCCu---UCGCC---------CUGGUGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 24041 0.69 0.339547
Target:  5'- cCUGGccaCGGGcacCGGGACCACCGGc -3'
miRNA:   3'- aGGCCaa-GCCUuc-GCCCUGGUGGCCc -5'
7173 5' -59.6 NC_001900.1 + 19310 0.68 0.397987
Target:  5'- gCCGGgucuaCGGcGGUGGGGCCAacaCGGu -3'
miRNA:   3'- aGGCCaa---GCCuUCGCCCUGGUg--GCCc -5'
7173 5' -59.6 NC_001900.1 + 5260 0.67 0.419456
Target:  5'- uUCCGGUUcgcucgcgcucacagCGaGGAGCGGccCgACCGGGa -3'
miRNA:   3'- -AGGCCAA---------------GC-CUUCGCCcuGgUGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 46004 0.67 0.434153
Target:  5'- gCCGG-UCGGGucGGCGGGugC-CCGc- -3'
miRNA:   3'- aGGCCaAGCCU--UCGCCCugGuGGCcc -5'
7173 5' -59.6 NC_001900.1 + 15999 0.67 0.462493
Target:  5'- cUCCGGUggcggcgguagCGGcGGCGGuGGCCAgcagcaccagucUCGGGc -3'
miRNA:   3'- -AGGCCAa----------GCCuUCGCC-CUGGU------------GGCCC- -5'
7173 5' -59.6 NC_001900.1 + 25111 0.67 0.466345
Target:  5'- gCCGGUUUcGAGGUGgaccgagccgccaccGaGACCGCUGGGg -3'
miRNA:   3'- aGGCCAAGcCUUCGC---------------C-CUGGUGGCCC- -5'
7173 5' -59.6 NC_001900.1 + 38526 0.66 0.481916
Target:  5'- --gGGUUgGgGGAGCcuGGGACCGUCGGGu -3'
miRNA:   3'- aggCCAAgC-CUUCG--CCCUGGUGGCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.