miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 3' -56.8 NC_001900.1 + 27440 0.66 0.606292
Target:  5'- --gGGUAGCcgagcaCCGaUGUGCCGACGCg -3'
miRNA:   3'- cagCCGUCGaa----GGC-GUAUGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 24057 0.66 0.606292
Target:  5'- --aGGCGGCUaUCCcgGCAgggACCGuCGCg -3'
miRNA:   3'- cagCCGUCGA-AGG--CGUa--UGGCuGCGa -5'
7174 3' -56.8 NC_001900.1 + 23829 0.66 0.595272
Target:  5'- aUCGGCgcuGGCUUCCGgc-GCUGGgGCUg -3'
miRNA:   3'- cAGCCG---UCGAAGGCguaUGGCUgCGA- -5'
7174 3' -56.8 NC_001900.1 + 4371 0.66 0.584283
Target:  5'- -gCGGCcuGGCUgCCGCAggggACCGcguuccACGCUg -3'
miRNA:   3'- caGCCG--UCGAaGGCGUa---UGGC------UGCGA- -5'
7174 3' -56.8 NC_001900.1 + 33928 0.66 0.562435
Target:  5'- cUCGGgAGCgugccUCgGCuggugugGCCGACGCUc -3'
miRNA:   3'- cAGCCgUCGa----AGgCGua-----UGGCUGCGA- -5'
7174 3' -56.8 NC_001900.1 + 12030 0.66 0.551592
Target:  5'- aGUCGGCuGacaCCGCGUACaacgCGAUGCa -3'
miRNA:   3'- -CAGCCGuCgaaGGCGUAUG----GCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 9876 0.67 0.540813
Target:  5'- -gCGGCGGCUcgaaUCCugAUGCUGAUGCa -3'
miRNA:   3'- caGCCGUCGA----AGGcgUAUGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 13311 0.67 0.537593
Target:  5'- cGUCGGCGGCguguucaCCccuggcuacggccaGCGgagGCCGACGUg -3'
miRNA:   3'- -CAGCCGUCGaa-----GG--------------CGUa--UGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 33368 0.67 0.537593
Target:  5'- aGUCGGCGucugcugcugcGCUUCUucagcaggagcgguGUcgACCGGCGCg -3'
miRNA:   3'- -CAGCCGU-----------CGAAGG--------------CGuaUGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 15766 0.67 0.530105
Target:  5'- --gGuGCGGCcUgCGCcgGCCGACGCg -3'
miRNA:   3'- cagC-CGUCGaAgGCGuaUGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 10737 0.67 0.530105
Target:  5'- aGUCGGUGGCcaagaCGC-UGCCGaACGCa -3'
miRNA:   3'- -CAGCCGUCGaag--GCGuAUGGC-UGCGa -5'
7174 3' -56.8 NC_001900.1 + 23318 0.67 0.530105
Target:  5'- gGUCGGCcccGGCUgggCCGaguucUAUACCGGCGg- -3'
miRNA:   3'- -CAGCCG---UCGAa--GGC-----GUAUGGCUGCga -5'
7174 3' -56.8 NC_001900.1 + 7324 0.67 0.519477
Target:  5'- gGUCGGguGUaccUCCGac-GCCGACGUg -3'
miRNA:   3'- -CAGCCguCGa--AGGCguaUGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 23627 0.67 0.487094
Target:  5'- gGUCGGUGGCgcgaaccUCgCGCAguugggcUACCGGCGUa -3'
miRNA:   3'- -CAGCCGUCGa------AG-GCGU-------AUGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 19482 0.68 0.467725
Target:  5'- -cCGGCGGCUgccgguggaCCGCucucggacGUACuCGGCGCUg -3'
miRNA:   3'- caGCCGUCGAa--------GGCG--------UAUG-GCUGCGA- -5'
7174 3' -56.8 NC_001900.1 + 6577 0.69 0.417809
Target:  5'- aUCGGCuuuuguccuGGCUuaCGCgcugaagucgaagGUACCGACGCUg -3'
miRNA:   3'- cAGCCG---------UCGAagGCG-------------UAUGGCUGCGA- -5'
7174 3' -56.8 NC_001900.1 + 32681 0.7 0.364302
Target:  5'- -cCGGcCAGCgaacUCCGCGaguucgucUGCCGACGUg -3'
miRNA:   3'- caGCC-GUCGa---AGGCGU--------AUGGCUGCGa -5'
7174 3' -56.8 NC_001900.1 + 40305 0.77 0.113685
Target:  5'- gGUCGGCAGUgagCCGCugcgGCCGugGUUg -3'
miRNA:   3'- -CAGCCGUCGaa-GGCGua--UGGCugCGA- -5'
7174 3' -56.8 NC_001900.1 + 15813 0.8 0.078398
Target:  5'- -aCGGCAGCUacUCCGC--GCCGugGCUg -3'
miRNA:   3'- caGCCGUCGA--AGGCGuaUGGCugCGA- -5'
7174 3' -56.8 NC_001900.1 + 38303 1.08 0.000706
Target:  5'- gGUCGGCAGCUUCCGCAUACCGACGCUg -3'
miRNA:   3'- -CAGCCGUCGAAGGCGUAUGGCUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.