miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 38338 1.13 0.000756
Target:  5'- gGGAACAACACCUGCAGUAGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUGUGGACGUCAUCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30980 0.81 0.128073
Target:  5'- aGGAACGACgcgauggacgcgccaGCCUGCAccacGGCCGCAGCc -3'
miRNA:   3'- -CCUUGUUG---------------UGGACGUca--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 21240 0.8 0.154667
Target:  5'- cGGAACuggcuacaacggAGCGCCUGCGGgAGCUGCAGg -3'
miRNA:   3'- -CCUUG------------UUGUGGACGUCaUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 6175 0.79 0.173132
Target:  5'- cGAGCAACGCUUcacGCAGUGGCgGCuGCg -3'
miRNA:   3'- cCUUGUUGUGGA---CGUCAUCGgCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 30394 0.77 0.240704
Target:  5'- cGAGCuGCGCCUGCAGc-GCCGCacGGCc -3'
miRNA:   3'- cCUUGuUGUGGACGUCauCGGCG--UCG- -5'
7174 5' -52.6 NC_001900.1 + 1118 0.74 0.363183
Target:  5'- aGGAcgcaACAGCACCcgGCAaggAGCCGgGGCa -3'
miRNA:   3'- -CCU----UGUUGUGGa-CGUca-UCGGCgUCG- -5'
7174 5' -52.6 NC_001900.1 + 16560 0.74 0.371229
Target:  5'- uGGAGCGucacagGCACCUGagcuucuCGGUGGUguCGCAGCg -3'
miRNA:   3'- -CCUUGU------UGUGGAC-------GUCAUCG--GCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 23593 0.73 0.40939
Target:  5'- gGGAGCcACGCUgGCGGcucaGGCCGguGCg -3'
miRNA:   3'- -CCUUGuUGUGGaCGUCa---UCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 20688 0.73 0.437815
Target:  5'- cGGuGACgAGCACCUGCAGUGGCaggucuuCGCuGUc -3'
miRNA:   3'- -CC-UUG-UUGUGGACGUCAUCG-------GCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 16011 0.72 0.448889
Target:  5'- cGGuAGCGGCg---GCGGUGGCCaGCAGCa -3'
miRNA:   3'- -CC-UUGUUGuggaCGUCAUCGG-CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 39860 0.71 0.501062
Target:  5'- uGGAGCAcggcggucgguACGCCgugGCGGUAcaucGCgUGCAGCa -3'
miRNA:   3'- -CCUUGU-----------UGUGGa--CGUCAU----CG-GCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 20213 0.71 0.511822
Target:  5'- aGAACGAgACCgGC-GUAGCCacgcuGCAGCu -3'
miRNA:   3'- cCUUGUUgUGGaCGuCAUCGG-----CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 43088 0.7 0.555733
Target:  5'- aGGAuCAGCcGCUUGCGGccUGGCCGguuCAGCa -3'
miRNA:   3'- -CCUuGUUG-UGGACGUC--AUCGGC---GUCG- -5'
7174 5' -52.6 NC_001900.1 + 23301 0.7 0.566893
Target:  5'- cGAGuCAACACCacgGCGGUcGGCCcCGGCu -3'
miRNA:   3'- cCUU-GUUGUGGa--CGUCA-UCGGcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 30420 0.7 0.589371
Target:  5'- aGGAACccGCGCCgGUcgauGUAGCUGCAGa -3'
miRNA:   3'- -CCUUGu-UGUGGaCGu---CAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 37762 0.7 0.589371
Target:  5'- uGAACGAauCACg-GUGGUAGCCGguGCc -3'
miRNA:   3'- cCUUGUU--GUGgaCGUCAUCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 22752 0.69 0.612003
Target:  5'- cGGAugGACGCCgaaGC-GUGGCUcgcgucugagaaGCGGCu -3'
miRNA:   3'- -CCUugUUGUGGa--CGuCAUCGG------------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 676 0.69 0.613137
Target:  5'- uGGAGCugcucuGACGCCcgauuucagccucugGCGGgacaugccacgGGCCGCAGCg -3'
miRNA:   3'- -CCUUG------UUGUGGa--------------CGUCa----------UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 15262 0.69 0.623352
Target:  5'- cGAAgGACACCUuggucgagGCcGUGGCCGCAc- -3'
miRNA:   3'- cCUUgUUGUGGA--------CGuCAUCGGCGUcg -5'
7174 5' -52.6 NC_001900.1 + 31727 0.69 0.623352
Target:  5'- uGGuucACAGcCACCUgGCGGUuGaCCGCAGUg -3'
miRNA:   3'- -CCu--UGUU-GUGGA-CGUCAuC-GGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.