miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7174 5' -52.6 NC_001900.1 + 676 0.69 0.613137
Target:  5'- uGGAGCugcucuGACGCCcgauuucagccucugGCGGgacaugccacgGGCCGCAGCg -3'
miRNA:   3'- -CCUUG------UUGUGGa--------------CGUCa----------UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 737 0.66 0.788086
Target:  5'- uGGAACGucUACC-GCAGccGCUGguGCg -3'
miRNA:   3'- -CCUUGUu-GUGGaCGUCauCGGCguCG- -5'
7174 5' -52.6 NC_001900.1 + 1076 0.66 0.827182
Target:  5'- cGGAAgAGgAUCcGcCGGUAGCgGCGGUg -3'
miRNA:   3'- -CCUUgUUgUGGaC-GUCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 1118 0.74 0.363183
Target:  5'- aGGAcgcaACAGCACCcgGCAaggAGCCGgGGCa -3'
miRNA:   3'- -CCU----UGUUGUGGa-CGUca-UCGGCgUCG- -5'
7174 5' -52.6 NC_001900.1 + 1217 0.68 0.713498
Target:  5'- cGGcAACGcagGCACCgGUgguguacucGGUGGCgGCGGCa -3'
miRNA:   3'- -CC-UUGU---UGUGGaCG---------UCAUCGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 5611 0.67 0.767453
Target:  5'- cGGAGCuGCGCUggGCAGgcaucgguGCCGCcuGGUa -3'
miRNA:   3'- -CCUUGuUGUGGa-CGUCau------CGGCG--UCG- -5'
7174 5' -52.6 NC_001900.1 + 5959 0.67 0.756909
Target:  5'- uGGGCuGGCugCUGaacCGGccaGGCCGCAGCg -3'
miRNA:   3'- cCUUG-UUGugGAC---GUCa--UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 6175 0.79 0.173132
Target:  5'- cGAGCAACGCUUcacGCAGUGGCgGCuGCg -3'
miRNA:   3'- cCUUGUUGUGGA---CGUCAUCGgCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 8394 0.68 0.702401
Target:  5'- cGGAGCuGCACCgUGCggacugggAGUGGCa-CGGCa -3'
miRNA:   3'- -CCUUGuUGUGG-ACG--------UCAUCGgcGUCG- -5'
7174 5' -52.6 NC_001900.1 + 8900 0.68 0.68
Target:  5'- cGGcGCGuCACCcGCAcagAGUCGCGGCa -3'
miRNA:   3'- -CCuUGUuGUGGaCGUca-UCGGCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 9427 0.69 0.634709
Target:  5'- cGGACGAagaGCUgugGCAGUGGUgGCAGg -3'
miRNA:   3'- cCUUGUUg--UGGa--CGUCAUCGgCGUCg -5'
7174 5' -52.6 NC_001900.1 + 10598 0.67 0.767453
Target:  5'- gGGggUgauuccgccuGACGCCUgaGCAGUAuGCaGCGGCc -3'
miRNA:   3'- -CCuuG----------UUGUGGA--CGUCAU-CGgCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 11632 0.66 0.788086
Target:  5'- aGGAGCuuCGCCa--GGaGGCCGCuGCu -3'
miRNA:   3'- -CCUUGuuGUGGacgUCaUCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 15262 0.69 0.623352
Target:  5'- cGAAgGACACCUuggucgagGCcGUGGCCGCAc- -3'
miRNA:   3'- cCUUgUUGUGGA--------CGuCAUCGGCGUcg -5'
7174 5' -52.6 NC_001900.1 + 15533 0.66 0.817708
Target:  5'- cGAGCGAauCACCaagcaGCAGUacgaGGCUGCuGCg -3'
miRNA:   3'- cCUUGUU--GUGGa----CGUCA----UCGGCGuCG- -5'
7174 5' -52.6 NC_001900.1 + 16011 0.72 0.448889
Target:  5'- cGGuAGCGGCg---GCGGUGGCCaGCAGCa -3'
miRNA:   3'- -CC-UUGUUGuggaCGUCAUCGG-CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 16560 0.74 0.371229
Target:  5'- uGGAGCGucacagGCACCUGagcuucuCGGUGGUguCGCAGCg -3'
miRNA:   3'- -CCUUGU------UGUGGAC-------GUCAUCG--GCGUCG- -5'
7174 5' -52.6 NC_001900.1 + 18678 0.66 0.817708
Target:  5'- uGGAguacucGCAGCAgCUUGCcgacaAGUGGCUgggggaGCAGCa -3'
miRNA:   3'- -CCU------UGUUGU-GGACG-----UCAUCGG------CGUCG- -5'
7174 5' -52.6 NC_001900.1 + 19534 0.67 0.767453
Target:  5'- cGAACuucugGACACC-GCcGUGGCCGUGGg -3'
miRNA:   3'- cCUUG-----UUGUGGaCGuCAUCGGCGUCg -5'
7174 5' -52.6 NC_001900.1 + 20213 0.71 0.511822
Target:  5'- aGAACGAgACCgGC-GUAGCCacgcuGCAGCu -3'
miRNA:   3'- cCUUGUUgUGGaCGuCAUCGG-----CGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.