Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7174 | 5' | -52.6 | NC_001900.1 | + | 21139 | 0.68 | 0.728889 |
Target: 5'- uGGGACGAguacuuccucgggauCGCCacgGCAGcGGCC-CAGCg -3' miRNA: 3'- -CCUUGUU---------------GUGGa--CGUCaUCGGcGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 1217 | 0.68 | 0.713498 |
Target: 5'- cGGcAACGcagGCACCgGUgguguacucGGUGGCgGCGGCa -3' miRNA: 3'- -CC-UUGU---UGUGGaCG---------UCAUCGgCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 48329 | 0.68 | 0.712392 |
Target: 5'- ---cCAGCGgCUGCGGUAgacguuccagaccGCUGCGGCc -3' miRNA: 3'- ccuuGUUGUgGACGUCAU-------------CGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 8394 | 0.68 | 0.702401 |
Target: 5'- cGGAGCuGCACCgUGCggacugggAGUGGCa-CGGCa -3' miRNA: 3'- -CCUUGuUGUGG-ACG--------UCAUCGgcGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 8900 | 0.68 | 0.68 |
Target: 5'- cGGcGCGuCACCcGCAcagAGUCGCGGCa -3' miRNA: 3'- -CCuUGUuGUGGaCGUca-UCGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 24959 | 0.69 | 0.66872 |
Target: 5'- cGGGuacGCACCU--GGUGGCgGCGGCg -3' miRNA: 3'- -CCUuguUGUGGAcgUCAUCGgCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 33931 | 0.69 | 0.657404 |
Target: 5'- gGGAGCGugccuCGgCUGguGUGGCCGacgcucgacCAGCc -3' miRNA: 3'- -CCUUGUu----GUgGACguCAUCGGC---------GUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 44687 | 0.69 | 0.646063 |
Target: 5'- uGGAACGcgguCcCCUGCGGcagccaggccgcUGGCCGCuGCc -3' miRNA: 3'- -CCUUGUu---GuGGACGUC------------AUCGGCGuCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 42843 | 0.69 | 0.639252 |
Target: 5'- cGGGAguGCgugugGCCgUGCAGUAGgaucaauccuucaucCCGCAGCc -3' miRNA: 3'- -CCUUguUG-----UGG-ACGUCAUC---------------GGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 9427 | 0.69 | 0.634709 |
Target: 5'- cGGACGAagaGCUgugGCAGUGGUgGCAGg -3' miRNA: 3'- cCUUGUUg--UGGa--CGUCAUCGgCGUCg -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 28974 | 0.69 | 0.634709 |
Target: 5'- --uGCucGCGCUUGCAGc-GCCGCAGUu -3' miRNA: 3'- ccuUGu-UGUGGACGUCauCGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 31727 | 0.69 | 0.623352 |
Target: 5'- uGGuucACAGcCACCUgGCGGUuGaCCGCAGUg -3' miRNA: 3'- -CCu--UGUU-GUGGA-CGUCAuC-GGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 15262 | 0.69 | 0.623352 |
Target: 5'- cGAAgGACACCUuggucgagGCcGUGGCCGCAc- -3' miRNA: 3'- cCUUgUUGUGGA--------CGuCAUCGGCGUcg -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 676 | 0.69 | 0.613137 |
Target: 5'- uGGAGCugcucuGACGCCcgauuucagccucugGCGGgacaugccacgGGCCGCAGCg -3' miRNA: 3'- -CCUUG------UUGUGGa--------------CGUCa----------UCGGCGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 22752 | 0.69 | 0.612003 |
Target: 5'- cGGAugGACGCCgaaGC-GUGGCUcgcgucugagaaGCGGCu -3' miRNA: 3'- -CCUugUUGUGGa--CGuCAUCGG------------CGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 37762 | 0.7 | 0.589371 |
Target: 5'- uGAACGAauCACg-GUGGUAGCCGguGCc -3' miRNA: 3'- cCUUGUU--GUGgaCGUCAUCGGCguCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 30420 | 0.7 | 0.589371 |
Target: 5'- aGGAACccGCGCCgGUcgauGUAGCUGCAGa -3' miRNA: 3'- -CCUUGu-UGUGGaCGu---CAUCGGCGUCg -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 23301 | 0.7 | 0.566893 |
Target: 5'- cGAGuCAACACCacgGCGGUcGGCCcCGGCu -3' miRNA: 3'- cCUU-GUUGUGGa--CGUCA-UCGGcGUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 43088 | 0.7 | 0.555733 |
Target: 5'- aGGAuCAGCcGCUUGCGGccUGGCCGguuCAGCa -3' miRNA: 3'- -CCUuGUUG-UGGACGUC--AUCGGC---GUCG- -5' |
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7174 | 5' | -52.6 | NC_001900.1 | + | 20213 | 0.71 | 0.511822 |
Target: 5'- aGAACGAgACCgGC-GUAGCCacgcuGCAGCu -3' miRNA: 3'- cCUUGUUgUGGaCGuCAUCGG-----CGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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