miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7175 3' -50.9 NC_001900.1 + 34831 0.66 0.877107
Target:  5'- aUCuCGGaGAccucGGUCAGCAUCuucgccagAGGCACCGg -3'
miRNA:   3'- -GGuGCC-CU----UUAGUCGUAG--------UCUGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 21719 0.67 0.843006
Target:  5'- gCCGuuGGAGAUCGagAUCGGAUACCGc -3'
miRNA:   3'- -GGUgcCCUUUAGUcgUAGUCUGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 29349 0.68 0.824488
Target:  5'- uCCAacuuCGGGGucggugccGAUCAGCAcCGGAC-CCAu -3'
miRNA:   3'- -GGU----GCCCU--------UUAGUCGUaGUCUGuGGU- -5'
7175 3' -50.9 NC_001900.1 + 15111 0.68 0.814896
Target:  5'- gCCACcGGcuGGUCgAGCGUCGGccACACCAg -3'
miRNA:   3'- -GGUGcCCu-UUAG-UCGUAGUC--UGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 3954 0.71 0.653091
Target:  5'- uCCACGGcGAAcgCGGCcgGUCucacGGGCACCu -3'
miRNA:   3'- -GGUGCC-CUUuaGUCG--UAG----UCUGUGGu -5'
7175 3' -50.9 NC_001900.1 + 19816 0.72 0.596037
Target:  5'- uCUACGGcGAGAaCuGCAUCAucGACACCGa -3'
miRNA:   3'- -GGUGCC-CUUUaGuCGUAGU--CUGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 29016 0.76 0.376361
Target:  5'- aCCuuCGGGGAcAUCGGCGgugUAGACGCCGa -3'
miRNA:   3'- -GGu-GCCCUU-UAGUCGUa--GUCUGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 14071 0.77 0.31609
Target:  5'- gCACGGGAuccUCGGCGcUCAGAC-CCAg -3'
miRNA:   3'- gGUGCCCUuu-AGUCGU-AGUCUGuGGU- -5'
7175 3' -50.9 NC_001900.1 + 34921 0.67 0.851912
Target:  5'- aCGCGGGA---CAGUcgUAGACGCg- -3'
miRNA:   3'- gGUGCCCUuuaGUCGuaGUCUGUGgu -5'
7175 3' -50.9 NC_001900.1 + 12068 0.66 0.913585
Target:  5'- aCAa-GGAGAUUAGCAgauggccgCAGGCACUg -3'
miRNA:   3'- gGUgcCCUUUAGUCGUa-------GUCUGUGGu -5'
7175 3' -50.9 NC_001900.1 + 19850 0.66 0.906867
Target:  5'- aCGCGaGGAgcaGAUCAGCuccgaGUCGGGCuccCCGg -3'
miRNA:   3'- gGUGC-CCU---UUAGUCG-----UAGUCUGu--GGU- -5'
7175 3' -50.9 NC_001900.1 + 30010 0.66 0.912927
Target:  5'- aCGCGGG----CAGCGUCugcgccgGGAUGCCAg -3'
miRNA:   3'- gGUGCCCuuuaGUCGUAG-------UCUGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 16878 0.66 0.906867
Target:  5'- -aGCGuGGA--UCGGCGUCGGGaucguCGCCAu -3'
miRNA:   3'- ggUGC-CCUuuAGUCGUAGUCU-----GUGGU- -5'
7175 3' -50.9 NC_001900.1 + 3761 0.66 0.913585
Target:  5'- cUCGCGGcgcucguucgauGAGGUCGGCGUCGu-CACCu -3'
miRNA:   3'- -GGUGCC------------CUUUAGUCGUAGUcuGUGGu -5'
7175 3' -50.9 NC_001900.1 + 45492 0.7 0.675845
Target:  5'- aCGCGGGGAA-CAGCGagacCGGauGCACCAg -3'
miRNA:   3'- gGUGCCCUUUaGUCGUa---GUC--UGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 45321 0.66 0.902695
Target:  5'- gCCGCGaggucaccuugagcuGGAAGUUcagGGUGUCGGugACCGu -3'
miRNA:   3'- -GGUGC---------------CCUUUAG---UCGUAGUCugUGGU- -5'
7175 3' -50.9 NC_001900.1 + 29394 0.66 0.877107
Target:  5'- gCCAgGGGAAGUCAGgGaucuucUCGGuggaGCCGg -3'
miRNA:   3'- -GGUgCCCUUUAGUCgU------AGUCug--UGGU- -5'
7175 3' -50.9 NC_001900.1 + 31500 0.67 0.851912
Target:  5'- aCACc-GAAGUCAGCG-CGGGCAUCAg -3'
miRNA:   3'- gGUGccCUUUAGUCGUaGUCUGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 37980 1.11 0.001708
Target:  5'- gCCACGGGAAAUCAGCAUCAGACACCAg -3'
miRNA:   3'- -GGUGCCCUUUAGUCGUAGUCUGUGGU- -5'
7175 3' -50.9 NC_001900.1 + 5911 0.77 0.340996
Target:  5'- uCCugGGGGAcAUCAGC-UCAGGCGgCAc -3'
miRNA:   3'- -GGugCCCUU-UAGUCGuAGUCUGUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.