miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7175 5' -62.3 NC_001900.1 + 48701 0.69 0.205802
Target:  5'- -gUCGuCGCCgGGUGGCuGuCCagUCGCCc -3'
miRNA:   3'- aaAGC-GCGGgCCACCG-CuGGg-AGCGG- -5'
7175 5' -62.3 NC_001900.1 + 47882 0.68 0.233683
Target:  5'- --cCGC-CCCGGccgcuuccGGCGGCCCacCGCCg -3'
miRNA:   3'- aaaGCGcGGGCCa-------CCGCUGGGa-GCGG- -5'
7175 5' -62.3 NC_001900.1 + 47309 0.73 0.100374
Target:  5'- -gUCGCGUCCGGgcaGGagaACCCUUGCCc -3'
miRNA:   3'- aaAGCGCGGGCCa--CCgc-UGGGAGCGG- -5'
7175 5' -62.3 NC_001900.1 + 38014 1.08 0.000234
Target:  5'- gUUUCGCGCCCGGUGGCGACCCUCGCCc -3'
miRNA:   3'- -AAAGCGCGGGCCACCGCUGGGAGCGG- -5'
7175 5' -62.3 NC_001900.1 + 36145 0.72 0.135203
Target:  5'- --aCGUGCUCGGUGaGCGACUucacggCUCGCUu -3'
miRNA:   3'- aaaGCGCGGGCCAC-CGCUGG------GAGCGG- -5'
7175 5' -62.3 NC_001900.1 + 36009 0.69 0.198528
Target:  5'- --cCGCGugaacggcccccuCCCGGUGGaUGucaaguuaggcucaGCCCUCGCCg -3'
miRNA:   3'- aaaGCGC-------------GGGCCACC-GC--------------UGGGAGCGG- -5'
7175 5' -62.3 NC_001900.1 + 34843 0.69 0.227863
Target:  5'- --aCGUGCCUGGccGCGACCUuguUCGCg -3'
miRNA:   3'- aaaGCGCGGGCCacCGCUGGG---AGCGg -5'
7175 5' -62.3 NC_001900.1 + 32234 0.68 0.251893
Target:  5'- --cCGCcacGCCCGGUGGUuGCCCgugaCGaCCa -3'
miRNA:   3'- aaaGCG---CGGGCCACCGcUGGGa---GC-GG- -5'
7175 5' -62.3 NC_001900.1 + 26257 0.7 0.180375
Target:  5'- -cUCGCGCUCGGccGGCGGgguccacUCCUCGUUg -3'
miRNA:   3'- aaAGCGCGGGCCa-CCGCU-------GGGAGCGG- -5'
7175 5' -62.3 NC_001900.1 + 25170 0.68 0.245697
Target:  5'- -cUCGgGCCgGGUacgaGGCGAgCCU-GCCg -3'
miRNA:   3'- aaAGCgCGGgCCA----CCGCUgGGAgCGG- -5'
7175 5' -62.3 NC_001900.1 + 23318 0.69 0.227863
Target:  5'- --gUGCGCCgGG-GcGCGGCCCgCGUCg -3'
miRNA:   3'- aaaGCGCGGgCCaC-CGCUGGGaGCGG- -5'
7175 5' -62.3 NC_001900.1 + 21268 0.69 0.200583
Target:  5'- --gCGCGgUCGGUGGCGcgaucgaccuGCCCcCGCUg -3'
miRNA:   3'- aaaGCGCgGGCCACCGC----------UGGGaGCGG- -5'
7175 5' -62.3 NC_001900.1 + 21079 0.66 0.344397
Target:  5'- cUUCGUGCCCGccgggGGCGGCgUcaacgUGCCg -3'
miRNA:   3'- aAAGCGCGGGCca---CCGCUGgGa----GCGG- -5'
7175 5' -62.3 NC_001900.1 + 21006 0.66 0.343599
Target:  5'- cUUUCGCccuggGCCucacggccugugaCGGUGGCGGCUC-CGCa -3'
miRNA:   3'- -AAAGCG-----CGG-------------GCCACCGCUGGGaGCGg -5'
7175 5' -62.3 NC_001900.1 + 18357 0.74 0.097665
Target:  5'- cUUUCGgGgCCGGUGGguuCGGCCaCUCGCUg -3'
miRNA:   3'- -AAAGCgCgGGCCACC---GCUGG-GAGCGG- -5'
7175 5' -62.3 NC_001900.1 + 17107 0.66 0.344397
Target:  5'- ---aGCaGCUCGGUGGguugcugaCGACCCUCaCCc -3'
miRNA:   3'- aaagCG-CGGGCCACC--------GCUGGGAGcGG- -5'
7175 5' -62.3 NC_001900.1 + 9136 0.68 0.239627
Target:  5'- --aCGgGCCgGGUGGUGGCCgUCcgaugacaGCCc -3'
miRNA:   3'- aaaGCgCGGgCCACCGCUGGgAG--------CGG- -5'
7175 5' -62.3 NC_001900.1 + 4986 0.67 0.284819
Target:  5'- -aUCGCGCCuCGaUGuuCGACCCgUUGCCg -3'
miRNA:   3'- aaAGCGCGG-GCcACc-GCUGGG-AGCGG- -5'
7175 5' -62.3 NC_001900.1 + 4150 0.65 0.358158
Target:  5'- ---aGCGgCCGGcGGUGACCCcaaacaacucggcgUCGUCu -3'
miRNA:   3'- aaagCGCgGGCCaCCGCUGGG--------------AGCGG- -5'
7175 5' -62.3 NC_001900.1 + 1616 0.66 0.313538
Target:  5'- cUUCuCGgCCGGUGGCGAcaccCCCggucagCGCg -3'
miRNA:   3'- aAAGcGCgGGCCACCGCU----GGGa-----GCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.