miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7176 3' -57.9 NC_001900.1 + 17467 0.66 0.563541
Target:  5'- --aCCgGCCGaACCGCCaGAAGCUCa-- -3'
miRNA:   3'- caaGGaCGGC-UGGUGG-CUUCGGGacc -5'
7176 3' -57.9 NC_001900.1 + 7463 0.66 0.563541
Target:  5'- -aUCgaGcCCGA-CACCGGAGCCCagaagcUGGa -3'
miRNA:   3'- caAGgaC-GGCUgGUGGCUUCGGG------ACC- -5'
7176 3' -57.9 NC_001900.1 + 20715 0.66 0.542251
Target:  5'- cUUCgCUGUCGACCagACCGAcggcagcaAGCUgUGGc -3'
miRNA:   3'- cAAG-GACGGCUGG--UGGCU--------UCGGgACC- -5'
7176 3' -57.9 NC_001900.1 + 13921 0.66 0.530655
Target:  5'- aUUCCUcGCUGACUACCcgcacguGAAGCaggagCUGGa -3'
miRNA:   3'- cAAGGA-CGGCUGGUGG-------CUUCGg----GACC- -5'
7176 3' -57.9 NC_001900.1 + 15082 0.66 0.521235
Target:  5'- --aCCUGuCCGACCcgucgaccuggACUGGAGCCaccggCUGGu -3'
miRNA:   3'- caaGGAC-GGCUGG-----------UGGCUUCGG-----GACC- -5'
7176 3' -57.9 NC_001900.1 + 35094 0.67 0.499518
Target:  5'- -gUCgUGCCGACgUACCGGacugguuGGCgaCCUGGa -3'
miRNA:   3'- caAGgACGGCUG-GUGGCU-------UCG--GGACC- -5'
7176 3' -57.9 NC_001900.1 + 16623 0.67 0.490333
Target:  5'- cGUUCCggucaacGCCGACCugaaCGcGGCCCaGGc -3'
miRNA:   3'- -CAAGGa------CGGCUGGug--GCuUCGGGaCC- -5'
7176 3' -57.9 NC_001900.1 + 25759 0.67 0.480221
Target:  5'- --gCCgggGCCGACCGCCGuGGUgUUGa -3'
miRNA:   3'- caaGGa--CGGCUGGUGGCuUCGgGACc -5'
7176 3' -57.9 NC_001900.1 + 25127 0.67 0.460311
Target:  5'- --aCCgaGCCG-CCACCGAGaCCgCUGGg -3'
miRNA:   3'- caaGGa-CGGCuGGUGGCUUcGG-GACC- -5'
7176 3' -57.9 NC_001900.1 + 18474 0.68 0.431291
Target:  5'- gGUUCCaGCCcgUCAUCGAgaaggccaaGGCCCUGGc -3'
miRNA:   3'- -CAAGGaCGGcuGGUGGCU---------UCGGGACC- -5'
7176 3' -57.9 NC_001900.1 + 33050 0.68 0.421858
Target:  5'- -gUgCUGCUGGCCACCGccGCCgCUa- -3'
miRNA:   3'- caAgGACGGCUGGUGGCuuCGG-GAcc -5'
7176 3' -57.9 NC_001900.1 + 43527 0.68 0.421858
Target:  5'- --cCCUGCCGugagcCCACCGGgagaAGUCCcGGu -3'
miRNA:   3'- caaGGACGGCu----GGUGGCU----UCGGGaCC- -5'
7176 3' -57.9 NC_001900.1 + 3154 0.68 0.421858
Target:  5'- -aUCCU-CgCGGCCAUCGAAGUCUUGa -3'
miRNA:   3'- caAGGAcG-GCUGGUGGCUUCGGGACc -5'
7176 3' -57.9 NC_001900.1 + 3984 0.68 0.412551
Target:  5'- --cCCUGCUG-CCgcguACCGGAGCCCg-- -3'
miRNA:   3'- caaGGACGGCuGG----UGGCUUCGGGacc -5'
7176 3' -57.9 NC_001900.1 + 46703 0.68 0.412551
Target:  5'- aGUUCUUGCCGACgCuuCGAgccGGCCCa-- -3'
miRNA:   3'- -CAAGGACGGCUG-GugGCU---UCGGGacc -5'
7176 3' -57.9 NC_001900.1 + 13139 0.69 0.394322
Target:  5'- --gCC-GCCGAUC-CCGGAGuUCCUGGg -3'
miRNA:   3'- caaGGaCGGCUGGuGGCUUC-GGGACC- -5'
7176 3' -57.9 NC_001900.1 + 48147 0.69 0.376622
Target:  5'- aGUUCCUGgaGGCCAgCGcggaaAAGCgCCUGGu -3'
miRNA:   3'- -CAAGGACggCUGGUgGC-----UUCG-GGACC- -5'
7176 3' -57.9 NC_001900.1 + 29737 0.69 0.359466
Target:  5'- --gUCUGCuCGGCCACCGuguuGGCCCc-- -3'
miRNA:   3'- caaGGACG-GCUGGUGGCu---UCGGGacc -5'
7176 3' -57.9 NC_001900.1 + 21720 0.69 0.351095
Target:  5'- cUUCgUGCUGGCCcuuCUGGAGCCCUu- -3'
miRNA:   3'- cAAGgACGGCUGGu--GGCUUCGGGAcc -5'
7176 3' -57.9 NC_001900.1 + 4129 0.7 0.334772
Target:  5'- gGUUCauCUGCCGACCGgCGAAGCggCCggcGGu -3'
miRNA:   3'- -CAAG--GACGGCUGGUgGCUUCG--GGa--CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.