miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7177 5' -57.9 NC_001900.1 + 17716 0.65 0.555734
Target:  5'- -cUCUGGggccugugcugaCCGUGGUcgcugagACCC-UCGGCAc -3'
miRNA:   3'- gaAGACCg-----------GGCACCA-------UGGGuAGCCGU- -5'
7177 5' -57.9 NC_001900.1 + 24162 0.66 0.516533
Target:  5'- -gUCguaGGUCCGgucucGGUACaCCAugUCGGCAg -3'
miRNA:   3'- gaAGa--CCGGGCa----CCAUG-GGU--AGCCGU- -5'
7177 5' -57.9 NC_001900.1 + 42447 0.67 0.4795
Target:  5'- --gCUGGCCCGUgccgugaacGGUgaacagccagggcuuGCUCAUCGGUu -3'
miRNA:   3'- gaaGACCGGGCA---------CCA---------------UGGGUAGCCGu -5'
7177 5' -57.9 NC_001900.1 + 21198 0.67 0.475464
Target:  5'- -aUCUcGGCCC-UGGUGaaCAUCGGUg -3'
miRNA:   3'- gaAGA-CCGGGcACCAUggGUAGCCGu -5'
7177 5' -57.9 NC_001900.1 + 6696 0.68 0.436088
Target:  5'- -aUCUa-CCgGUGGcaGCCCAUCGGCAa -3'
miRNA:   3'- gaAGAccGGgCACCa-UGGGUAGCCGU- -5'
7177 5' -57.9 NC_001900.1 + 18574 0.68 0.417117
Target:  5'- --gCUGGCaCCGcUGGUGCCCGacgugagcCGGCc -3'
miRNA:   3'- gaaGACCG-GGC-ACCAUGGGUa-------GCCGu -5'
7177 5' -57.9 NC_001900.1 + 25015 0.68 0.389628
Target:  5'- -gUUUGGCCgGUGGUcccgguGCCCGUggccaGGCGu -3'
miRNA:   3'- gaAGACCGGgCACCA------UGGGUAg----CCGU- -5'
7177 5' -57.9 NC_001900.1 + 35941 0.69 0.380732
Target:  5'- -aUCggcGGCUCGUagaGGUACUCGUCGcGCAg -3'
miRNA:   3'- gaAGa--CCGGGCA---CCAUGGGUAGC-CGU- -5'
7177 5' -57.9 NC_001900.1 + 23792 0.69 0.377212
Target:  5'- --aCUGGCCCuGUGGUccgacgacgggcuCCgGUCGGCu -3'
miRNA:   3'- gaaGACCGGG-CACCAu------------GGgUAGCCGu -5'
7177 5' -57.9 NC_001900.1 + 43865 0.7 0.299465
Target:  5'- --gCUGGgCCGacUGGUGCCacuUCGGCAu -3'
miRNA:   3'- gaaGACCgGGC--ACCAUGGgu-AGCCGU- -5'
7177 5' -57.9 NC_001900.1 + 33867 0.71 0.270929
Target:  5'- --aCUGGUCCuucucgacGUGGUACCCGUCaGCc -3'
miRNA:   3'- gaaGACCGGG--------CACCAUGGGUAGcCGu -5'
7177 5' -57.9 NC_001900.1 + 33163 0.73 0.203718
Target:  5'- aCUUCUGGCCC-UGG--CCCAgcUUGGCAa -3'
miRNA:   3'- -GAAGACCGGGcACCauGGGU--AGCCGU- -5'
7177 5' -57.9 NC_001900.1 + 36828 1.08 0.000576
Target:  5'- uCUUCUGGCCCGUGGUACCCAUCGGCAc -3'
miRNA:   3'- -GAAGACCGGGCACCAUGGGUAGCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.