miRNA display CGI


Results 1 - 20 of 25 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7178 3' -57.4 NC_001900.1 + 36476 1.1 0.00043
Target:  5'- uUCACCAGCAGGCUCAGGCCGUUCACGg -3'
miRNA:   3'- -AGUGGUCGUCCGAGUCCGGCAAGUGC- -5'
7178 3' -57.4 NC_001900.1 + 25153 0.81 0.061404
Target:  5'- -aGCCAGCcucgcagAGGCUCGGGCCGggUACGa -3'
miRNA:   3'- agUGGUCG-------UCCGAGUCCGGCaaGUGC- -5'
7178 3' -57.4 NC_001900.1 + 23600 0.75 0.148427
Target:  5'- aCGCUGGC-GGCUCAGGCCGgu-GCGa -3'
miRNA:   3'- aGUGGUCGuCCGAGUCCGGCaagUGC- -5'
7178 3' -57.4 NC_001900.1 + 13054 0.74 0.17971
Target:  5'- cCACCGGgAGG---GGGCCGUUCACGc -3'
miRNA:   3'- aGUGGUCgUCCgagUCCGGCAAGUGC- -5'
7178 3' -57.4 NC_001900.1 + 47213 0.73 0.205512
Target:  5'- uUCGCCcGCAGGCcgAGGCCGU-CACc -3'
miRNA:   3'- -AGUGGuCGUCCGagUCCGGCAaGUGc -5'
7178 3' -57.4 NC_001900.1 + 17245 0.73 0.211044
Target:  5'- gCACUGGCgaguucuucaccGGGCUCGGGCCGgUCAUc -3'
miRNA:   3'- aGUGGUCG------------UCCGAGUCCGGCaAGUGc -5'
7178 3' -57.4 NC_001900.1 + 27782 0.73 0.22249
Target:  5'- cCGcCCAGCGGGggCAGGUCGaUCGCGc -3'
miRNA:   3'- aGU-GGUCGUCCgaGUCCGGCaAGUGC- -5'
7178 3' -57.4 NC_001900.1 + 16775 0.72 0.253427
Target:  5'- gCGCgugaAGC-GGCUCGGGCCGUUCugcCGa -3'
miRNA:   3'- aGUGg---UCGuCCGAGUCCGGCAAGu--GC- -5'
7178 3' -57.4 NC_001900.1 + 38571 0.71 0.26676
Target:  5'- --cCCAGCAGGCcgAGGCCcaUCGCGg -3'
miRNA:   3'- aguGGUCGUCCGagUCCGGcaAGUGC- -5'
7178 3' -57.4 NC_001900.1 + 21583 0.71 0.26676
Target:  5'- aUCGCCgacGGCcGGCUCaAGGCCGU--GCGg -3'
miRNA:   3'- -AGUGG---UCGuCCGAG-UCCGGCAagUGC- -5'
7178 3' -57.4 NC_001900.1 + 9110 0.71 0.287814
Target:  5'- gCugCGGgauucggugucCGGGCUCAGGuUCGUUCGCGc -3'
miRNA:   3'- aGugGUC-----------GUCCGAGUCC-GGCAAGUGC- -5'
7178 3' -57.4 NC_001900.1 + 46134 0.7 0.310153
Target:  5'- aUCGCCgAGCuGGUcgaugacCAGGCCGUUgCGCGa -3'
miRNA:   3'- -AGUGG-UCGuCCGa------GUCCGGCAA-GUGC- -5'
7178 3' -57.4 NC_001900.1 + 15849 0.7 0.349427
Target:  5'- aCGCCAGCgucacggAGGCUCuGGUCGacCugGg -3'
miRNA:   3'- aGUGGUCG-------UCCGAGuCCGGCaaGugC- -5'
7178 3' -57.4 NC_001900.1 + 3078 0.69 0.36731
Target:  5'- -gACCGGCGGGa--AGGUCGUUgACGu -3'
miRNA:   3'- agUGGUCGUCCgagUCCGGCAAgUGC- -5'
7178 3' -57.4 NC_001900.1 + 48661 0.69 0.376045
Target:  5'- gCACaaucGCGGGCugUCGGGCUGUcgUCACGc -3'
miRNA:   3'- aGUGgu--CGUCCG--AGUCCGGCA--AGUGC- -5'
7178 3' -57.4 NC_001900.1 + 25034 0.68 0.403076
Target:  5'- gCACCGagguuggcGCGGGCUUcGGCCGcgCugGu -3'
miRNA:   3'- aGUGGU--------CGUCCGAGuCCGGCaaGugC- -5'
7178 3' -57.4 NC_001900.1 + 34358 0.68 0.421767
Target:  5'- cCACCGGCAGcgagugcaGCuUCGGGgCGUUgGCGu -3'
miRNA:   3'- aGUGGUCGUC--------CG-AGUCCgGCAAgUGC- -5'
7178 3' -57.4 NC_001900.1 + 25480 0.68 0.421767
Target:  5'- cCGCCAGCGuGGCUCccacggcccggAGGUCGUggaUGCGg -3'
miRNA:   3'- aGUGGUCGU-CCGAG-----------UCCGGCAa--GUGC- -5'
7178 3' -57.4 NC_001900.1 + 31253 0.68 0.430346
Target:  5'- -aGCCAGCAGGUUgugcugcCAGGUCG-UCAgGa -3'
miRNA:   3'- agUGGUCGUCCGA-------GUCCGGCaAGUgC- -5'
7178 3' -57.4 NC_001900.1 + 10615 0.68 0.431305
Target:  5'- aCGCCugAGCAguaugcagcGGCcCAGGCCGUgaUCACu -3'
miRNA:   3'- aGUGG--UCGU---------CCGaGUCCGGCA--AGUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.