miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7179 3' -58.4 NC_001900.1 + 43336 0.66 0.526016
Target:  5'- uCGGGCCGaCCGug--GGUCugCCAGAUGAa -3'
miRNA:   3'- -GUCUGGC-GGCuagaCCGG--GGUCUACU- -5'
7179 3' -58.4 NC_001900.1 + 21534 0.66 0.505203
Target:  5'- aCAGACCGCCGA-CUu-CCUCGGcGUGAg -3'
miRNA:   3'- -GUCUGGCGGCUaGAccGGGGUC-UACU- -5'
7179 3' -58.4 NC_001900.1 + 30145 0.67 0.423134
Target:  5'- -cGACagaGCCGAUCUGGaagauguacugaauCCCCucGGUGAu -3'
miRNA:   3'- guCUGg--CGGCUAGACC--------------GGGGu-CUACU- -5'
7179 3' -58.4 NC_001900.1 + 7306 0.68 0.398199
Target:  5'- --cGCCGCCGGUCUGGgCUugguCGGGUGu -3'
miRNA:   3'- gucUGGCGGCUAGACCgGG----GUCUACu -5'
7179 3' -58.4 NC_001900.1 + 40474 0.69 0.325344
Target:  5'- uGGAcCCGUCGAacccgagggugaucuUCUGGCCCCGGuccagcgGAg -3'
miRNA:   3'- gUCU-GGCGGCU---------------AGACCGGGGUCua-----CU- -5'
7179 3' -58.4 NC_001900.1 + 40381 0.7 0.306862
Target:  5'- --cGCCGCCGuacuUCUGGggaUCCCAGAUGu -3'
miRNA:   3'- gucUGGCGGCu---AGACC---GGGGUCUACu -5'
7179 3' -58.4 NC_001900.1 + 21601 0.7 0.306862
Target:  5'- aAGGCCGUgCGG-CUcGGCCCCAGGcUGAu -3'
miRNA:   3'- gUCUGGCG-GCUaGA-CCGGGGUCU-ACU- -5'
7179 3' -58.4 NC_001900.1 + 32823 0.7 0.299402
Target:  5'- gGGGCCaGUCGucguugCUGGCCCCcGGUGGc -3'
miRNA:   3'- gUCUGG-CGGCua----GACCGGGGuCUACU- -5'
7179 3' -58.4 NC_001900.1 + 32538 0.71 0.264206
Target:  5'- aGGACCGaCCGG-CUGGCCUC-GAUGu -3'
miRNA:   3'- gUCUGGC-GGCUaGACCGGGGuCUACu -5'
7179 3' -58.4 NC_001900.1 + 36231 1.09 0.000425
Target:  5'- aCAGACCGCCGAUCUGGCCCCAGAUGAg -3'
miRNA:   3'- -GUCUGGCGGCUAGACCGGGGUCUACU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.